Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0973.Seq
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f...    28   2.1  
At1g15580.1 68414.m01873 auxin-responsive protein / indoleacetic...    27   3.7  
At5g37660.1 68418.m04535 receptor-like protein kinase-related si...    27   6.5  
At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma mem...    27   6.5  
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ...    27   6.5  
At3g10650.1 68416.m01281 expressed protein                             27   6.5  
At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma m...    27   6.5  
At1g15180.1 68414.m01815 MATE efflux family protein contains Pfa...    26   8.6  

>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 117

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 105 PVCGTNGVTYGNRC-QLRCAKAIFAYDGPCCGG 200
           PVCGT+GVTY   C    C  A     G C  G
Sbjct: 53  PVCGTDGVTYWCGCPDAACHGARVVKKGACDTG 85


>At1g15580.1 68414.m01873 auxin-responsive protein / indoleacetic
           acid-induced protein 5 (IAA5) / auxin-induced protein
           (AUX2-27) identical to SP|P33078 Auxin-responsive
           protein IAA5 (Indoleacetic acid-induced protein 5)
           (Auxin-induced protein AUX2-27) {Arabidopsis thaliana}
          Length = 163

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 69  PPKCSRRRGGKLERLKSSLFSI 4
           PP CS RR   LER KSS   +
Sbjct: 58  PPVCSYRRKNSLERTKSSYVKV 79


>At5g37660.1 68418.m04535 receptor-like protein kinase-related
           similar to receptor-like protein kinase 4 (GI:13506745)
           {Arabidopsis thaliana}; embryonic abundant protein
           EMB24, white spruce, PIR:T09251; contains Pfam PF01657:
           Domain of unknown function
          Length = 288

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 164 FRTSQLAPVAVSNTVSTTNRPIFGGANTGTFSPQSA 57
           F  +  AP ++S+  S T+  +FGG +   FSP SA
Sbjct: 18  FLIAATAP-SLSSATSATDTFVFGGCSQQKFSPASA 52


>At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca2+-ATPase, putative (ACA11)
           identical to SP|Q9M2L4|ACAB_ARATH Potential
           calcium-transporting ATPase 11, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 11) {Arabidopsis
           thaliana}; strong similarity to calmodulin-stimulated
           calcium-ATPase [Brassica oleracea] GI:1805654
          Length = 1025

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 9   KTMKTSIVLIFLLVACCTLGAESTCICT 92
           K + +   L+  L AC T+G+ STCICT
Sbjct: 424 KQLMSDRALVRHLAACETMGS-STCICT 450


>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
           nearly identical to SCARECROW [Arabidopsis thaliana]
           GI:1497987
          Length = 653

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   KIENNEDFNRSNFPPRRLLH 61
           ++ +N D+N S+ PPRR+ H
Sbjct: 51  EMSSNPDYNNSSRPPRRVSH 70


>At3g10650.1 68416.m01281 expressed protein
          Length = 1309

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 125  TVSTTNRPIFGGANTGTFSPQSAAG 51
            TVS+T  PIFG +   T SP    G
Sbjct: 1128 TVSSTTTPIFGASTNNTPSPSPIFG 1152


>At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma
           membrane-type / Ca2+-ATPase, isoform 4 (ACA4) identical
           to SP|O22218 Calcium-transporting ATPase 4, plasma
           membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4)
           {Arabidopsis thaliana}
          Length = 1030

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 9   KTMKTSIVLIFLLVACCTLGAESTCICT 92
           K + +   L+  L AC T+G+ STCICT
Sbjct: 424 KKLMSDRALVRHLAACETMGS-STCICT 450


>At1g15180.1 68414.m01815 MATE efflux family protein contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 482

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 248 VFWLSLKCLGGTDSVPYSNCSITIVLVFINMLKLTCSSEK 367
           V+   L  LGG  ++ +SNC  TI+L  +      CS  +
Sbjct: 207 VYKSGLGNLGGALALSFSNCLYTIILGSLMCFSSACSETR 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,827,559
Number of Sequences: 28952
Number of extensions: 175631
Number of successful extensions: 424
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)