BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0973.Seq (410 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f... 28 2.1 At1g15580.1 68414.m01873 auxin-responsive protein / indoleacetic... 27 3.7 At5g37660.1 68418.m04535 receptor-like protein kinase-related si... 27 6.5 At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma mem... 27 6.5 At3g54220.1 68416.m05993 scarecrow transcription factor, putativ... 27 6.5 At3g10650.1 68416.m01281 expressed protein 27 6.5 At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma m... 27 6.5 At1g15180.1 68414.m01815 MATE efflux family protein contains Pfa... 26 8.6 >At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type family protein contains Pfam domain PF00050: Kazal-type serine protease inhibitor domain Length = 117 Score = 28.3 bits (60), Expect = 2.1 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Frame = +3 Query: 105 PVCGTNGVTYGNRC-QLRCAKAIFAYDGPCCGG 200 PVCGT+GVTY C C A G C G Sbjct: 53 PVCGTDGVTYWCGCPDAACHGARVVKKGACDTG 85 >At1g15580.1 68414.m01873 auxin-responsive protein / indoleacetic acid-induced protein 5 (IAA5) / auxin-induced protein (AUX2-27) identical to SP|P33078 Auxin-responsive protein IAA5 (Indoleacetic acid-induced protein 5) (Auxin-induced protein AUX2-27) {Arabidopsis thaliana} Length = 163 Score = 27.5 bits (58), Expect = 3.7 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -3 Query: 69 PPKCSRRRGGKLERLKSSLFSI 4 PP CS RR LER KSS + Sbjct: 58 PPVCSYRRKNSLERTKSSYVKV 79 >At5g37660.1 68418.m04535 receptor-like protein kinase-related similar to receptor-like protein kinase 4 (GI:13506745) {Arabidopsis thaliana}; embryonic abundant protein EMB24, white spruce, PIR:T09251; contains Pfam PF01657: Domain of unknown function Length = 288 Score = 26.6 bits (56), Expect = 6.5 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -1 Query: 164 FRTSQLAPVAVSNTVSTTNRPIFGGANTGTFSPQSA 57 F + AP ++S+ S T+ +FGG + FSP SA Sbjct: 18 FLIAATAP-SLSSATSATDTFVFGGCSQQKFSPASA 52 >At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA11) identical to SP|Q9M2L4|ACAB_ARATH Potential calcium-transporting ATPase 11, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 11) {Arabidopsis thaliana}; strong similarity to calmodulin-stimulated calcium-ATPase [Brassica oleracea] GI:1805654 Length = 1025 Score = 26.6 bits (56), Expect = 6.5 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 9 KTMKTSIVLIFLLVACCTLGAESTCICT 92 K + + L+ L AC T+G+ STCICT Sbjct: 424 KQLMSDRALVRHLAACETMGS-STCICT 450 >At3g54220.1 68416.m05993 scarecrow transcription factor, putative nearly identical to SCARECROW [Arabidopsis thaliana] GI:1497987 Length = 653 Score = 26.6 bits (56), Expect = 6.5 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = +2 Query: 2 KIENNEDFNRSNFPPRRLLH 61 ++ +N D+N S+ PPRR+ H Sbjct: 51 EMSSNPDYNNSSRPPRRVSH 70 >At3g10650.1 68416.m01281 expressed protein Length = 1309 Score = 26.6 bits (56), Expect = 6.5 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -1 Query: 125 TVSTTNRPIFGGANTGTFSPQSAAG 51 TVS+T PIFG + T SP G Sbjct: 1128 TVSSTTTPIFGASTNNTPSPSPIFG 1152 >At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma membrane-type / Ca2+-ATPase, isoform 4 (ACA4) identical to SP|O22218 Calcium-transporting ATPase 4, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4) {Arabidopsis thaliana} Length = 1030 Score = 26.6 bits (56), Expect = 6.5 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 9 KTMKTSIVLIFLLVACCTLGAESTCICT 92 K + + L+ L AC T+G+ STCICT Sbjct: 424 KKLMSDRALVRHLAACETMGS-STCICT 450 >At1g15180.1 68414.m01815 MATE efflux family protein contains Pfam profile PF01554: Uncharacterized membrane protein family Length = 482 Score = 26.2 bits (55), Expect = 8.6 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +2 Query: 248 VFWLSLKCLGGTDSVPYSNCSITIVLVFINMLKLTCSSEK 367 V+ L LGG ++ +SNC TI+L + CS + Sbjct: 207 VYKSGLGNLGGALALSFSNCLYTIILGSLMCFSSACSETR 246 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,827,559 Number of Sequences: 28952 Number of extensions: 175631 Number of successful extensions: 424 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 415 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 424 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 615542944 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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