Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0972.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    30   0.12 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    30   0.12 
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    30   0.15 
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   1.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   2.5  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   2.5  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   3.3  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   4.3  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    25   4.3  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    25   5.7  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    24   7.6  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    24   10.0 
SPAC630.06c |||conserved fungal protein|Schizosaccharomyces pomb...    24   10.0 

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 30.3 bits (65), Expect = 0.12
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -2

Query: 239  PGNTRRLAALNSHATAARPVVGKYGFRTSQLAPVAV-SNTVSTTNRPIFGGANT 81
            PGN+  ++A+N++ T+  PV        S+L+ + +  ++VS T +  FG ANT
Sbjct: 1625 PGNSSGMSAMNTNTTSTTPV------SLSELSEITLFPSSVSPTWKKSFGNANT 1672


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 30.3 bits (65), Expect = 0.12
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -2

Query: 239  PGNTRRLAALNSHATAARPVVGKYGFRTSQLAPVAV-SNTVSTTNRPIFGGANT 81
            PGN+  ++A+N++ T+  PV        S+L+ + +  ++VS T +  FG ANT
Sbjct: 1625 PGNSSGMSAMNTNTTSTTPV------SLSELSEITLFPSSVSPTWKKSFGNANT 1672


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 197 WHANLGLPDVSYFPGRPVFWLSLKCLGGTDSVPYSNCSITI 319
           W+A L   D +  P  P+ W    CL GT  +   N ++ +
Sbjct: 112 WNAYLNTLDETCMPDSPLLWKDKTCLEGTSMLDVINTNLRV 152


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 234 KYETSGSPKFACHRSTARRRQIWLSHISVGTCCRK 130
           K+E +G+  FA  R +   R + L  I+V + CR+
Sbjct: 587 KFEDAGASAFAFKRLSPELRDLTLYSIAVNSTCRQ 621


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 287 SVPYSNCSITIVLVFINMLKLTCSSEKY 370
           S PYS  S T +    N + L+CS E Y
Sbjct: 184 SSPYSTTSSTSLYSLYNDISLSCSPEPY 211


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 155 MCESHICLRRAVLRWHANLGLP 220
           + ESHIC   ++  W  N+ +P
Sbjct: 232 LSESHICFNSSIFGWVTNIVIP 253


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 131 SNTVSTTNRPIFGGA-NTGTFSPQSAAGDEEEN*N 30
           SN++ +TN P+FG A    T     +A   EEN N
Sbjct: 161 SNSIKSTNAPVFGTAVKNVTGENILSASSSEENLN 195


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +2

Query: 233 FPGRPVFWLSLKCLGGTDSVPYSNCSITIVLVFINMLKLTCSSEKYQIIN 382
           FPG   F+L      G D + YS       L      K  CS EK+ I+N
Sbjct: 214 FPGNEKFYL------GFDDISYSKLIADFQLWMT--FKAECSEEKFNIVN 255


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 294 GTESVPPRHFKLSQNTGRPGKYETSGSPKFACHR 193
           G +  PPR  +  QNT   G    + S KFA  R
Sbjct: 72  GGDQQPPRPLQRQQNTQGQGMKSGTASKKFATLR 105


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 336 FIKTKTIVIEQF-EYGTESVPPRHFKLSQ 253
           F++T  + + +F E  + S+  +HFKLS+
Sbjct: 294 FLETNILFLSEFFEVSSTSILAKHFKLSE 322


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 191 LRWHANLGLPDVSYFPGRPVF 253
           LR+H+   L DVSY P  P+F
Sbjct: 649 LRYHSR-ALRDVSYHPSLPLF 668


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 117  TNGVTYGNRCQLRCAKAIFAYDGPCCGGM 203
            TNG  Y +     C+ A+F YDGP   G+
Sbjct: 1054 TNGF-YHSLLLFLCSIAVFYYDGPNKDGL 1081


>SPAC630.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = -1

Query: 369 YFSEEQVSFNIFIKTKTIVIEQFEYGTESVPPRHFKLSQNT 247
           Y +++Q +FN+F    T+V +  E   ++  P ++ + +++
Sbjct: 57  YPNDDQATFNLFSDVNTVVTKVTEPSIKNSRPLNYYILEDS 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,550
Number of Sequences: 5004
Number of extensions: 34831
Number of successful extensions: 93
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)