Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0972.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 30 0.59
01_06_1092 + 34469732-34470118 29 1.0
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768 28 3.1
05_07_0130 + 27892416-27892737,27893526-27893604,27893689-278938... 27 4.1
06_01_1000 - 7778907-7780721 27 5.5
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489... 27 5.5
02_01_0126 + 924691-924839,925103-925220,925303-925389,925482-92... 27 5.5
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 27 7.2
10_08_0108 + 14860469-14861032 27 7.2
11_03_0209 - 11685211-11685341,11685557-11685623,11686608-116866... 26 9.5
11_01_0339 + 2533515-2534021,2534106-2534483 26 9.5
05_05_0124 - 22556302-22556358,22556866-22557097,22557629-22557651 26 9.5
>09_06_0176 +
21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 30.3 bits (65), Expect = 0.59
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = -3
Query: 241 SREIRDVWQP*IRMPPQHGPS*ANMAFAHLSWHLLP*VTPLVPQTGLYSVVQIQVLSAPK 62
SR RD W R+ G + F + + H LP + VP L + LSA
Sbjct: 41 SRRWRDFWVSMPRLNVDVGDFRDDGQFENFTVHALPLLDSSVPLRSLRLRSSLHYLSALW 100
Query: 61 VQQATRRKIRTIE 23
V A +RK+ +E
Sbjct: 101 VNHAVKRKVAVLE 113
>01_06_1092 + 34469732-34470118
Length = 128
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 105 PVCGTNGVTYGNRC-QLRCAKAIFAYDGPC 191
PVCG +GVTY C + CA A A G C
Sbjct: 65 PVCGADGVTYWCGCPEAACAGARVARRGYC 94
>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
Length = 1004
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -2
Query: 242 VPGNTRRLAALNSHATAARPVVGKYGFRTSQLAPVAVSNTVSTTNR 105
+P N+R+ L+S + +P+ GKY S +P+ T+S ++
Sbjct: 737 IPSNSRKFDGLSSLFSNGKPLPGKYTGDQSTNSPLPREETLSDCHK 782
>05_07_0130 +
27892416-27892737,27893526-27893604,27893689-27893806,
27894306-27894365
Length = 192
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 309 EQFEYGTESVPPRHFKLSQNTGRP--GKYETSGSPKFA 202
+Q++YGT PP H S RP G + + P FA
Sbjct: 37 QQYQYGTFQPPPHHHAASGELARPPVGFPQPAPPPGFA 74
>06_01_1000 - 7778907-7780721
Length = 604
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 257 AKIRDVPGNTRRLAALNSHATAARPVVGKYGFRTSQL 147
A++RDVPG R+ AL + RP V YG + L
Sbjct: 147 ARVRDVPG-MARIYALMQGCASVRPDVVTYGILVNGL 182
>03_05_1094 -
30348366-30348467,30348571-30348753,30348833-30348934,
30349617-30349967,30350049-30350276,30350353-30350509,
30351189-30351370,30351443-30351866,30351949-30352892,
30353509-30353773,30354558-30355120
Length = 1166
Score = 27.1 bits (57), Expect = 5.5
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -2
Query: 245 DVPGNTRRLAALNSHATAARPVVGK-YGFR-TSQLAPVAVSNTVSTTNRPIFGGANTGTF 72
DV GNT LAAL AAR G+ Y +R T L P ++ + F G +
Sbjct: 22 DVAGNTWDLAALPPPPPAARGGGGEVYIYRNTYNLVPRSIGGCRGSVRSLKFFGNDVEVL 81
Query: 71 SPQSAAGDEEEN 36
P++ D+ E+
Sbjct: 82 PPEAGELDQLES 93
>02_01_0126 +
924691-924839,925103-925220,925303-925389,925482-925631,
925750-925809,925914-925976
Length = 208
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 212 GLPDVSYFPGRPVFWLSLKCLGGTDSVPY 298
GL ++FP V WL KCLG D + Y
Sbjct: 45 GLRHFTFFPR--VVWLISKCLGTADGLKY 71
>12_02_0228 + 15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 26.6 bits (56), Expect = 7.2
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = -2
Query: 239 PGNTRRLAALNSHATAARPVVG-KYGFRTSQLAPVAVS-----NTVSTTNRPIFGGANTG 78
PG++ A S A + PV G T+ P + S N +++TN P FG T
Sbjct: 840 PGSSPSFA-FGSSAPGSSPVFSLAVGSGTTSATPASASSPIFCNRLTSTNAPPFGSPATS 898
Query: 77 TFSPQSA 57
FS S+
Sbjct: 899 PFSSTSS 905
>10_08_0108 + 14860469-14861032
Length = 187
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -1
Query: 252 NTGRPGKYETSGSPKFACHR--STARRRQ 172
N G+PG+ E +G+P+ A R T RRQ
Sbjct: 124 NGGQPGEEEAAGTPRVATARPAGTRERRQ 152
>11_03_0209 -
11685211-11685341,11685557-11685623,11686608-11686697,
11686872-11686965,11687596-11687668,11687772-11687880,
11690338-11690437,11691345-11691443,11691519-11691589,
11691904-11691955,11691976-11692007
Length = 305
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +1
Query: 175 PTTGRAAVACEFRAARRLVFPGTSRILA*FKMSRRD*LCSVFEL-FDYNCFGFYKYVKTN 351
PT G FR A L+ ++ + +R D V L + CFG +YVK N
Sbjct: 231 PTKGLIENHASFRLAFALLLAAVIFLIMSLRRARNDVFHLVLSLLWSGFCFGITRYVKAN 290
>11_01_0339 + 2533515-2534021,2534106-2534483
Length = 294
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 224 RLAALNSHATAARPVVGKYGFRTSQLAPVAVSNTVSTTNRPIF 96
RLA PVV YG+ SQLA +A + T + F
Sbjct: 38 RLAGTRPDVERVIPVVDVYGYHPSQLAALAGEASARDTEQWFF 80
>05_05_0124 -
22556302-22556358,22556866-22557097,22557629-22557651
Length = 103
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 96 RWCKYRYFQPPKCSRRRGGKLERLK 22
RW +YR F P S RG E K
Sbjct: 8 RWSRYRVFLRPMWSNNRGSPWEHTK 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,572,583
Number of Sequences: 37544
Number of extensions: 247338
Number of successful extensions: 664
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -