Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0972.Seq
         (399 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    25   1.3  
AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    23   3.1  
AM085517-1|CAJ30215.1|  339|Anopheles gambiae putative angiotens...    23   3.1  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   4.1  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    23   4.1  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    23   5.4  
DQ396551-1|ABD60146.1|  354|Anopheles gambiae adipokinetic hormo...    22   7.2  
AY298745-1|AAQ63187.1|  354|Anopheles gambiae G-protein coupled ...    22   7.2  
AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    22   9.5  
AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    22   9.5  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    22   9.5  
AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR prot...    22   9.5  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          22   9.5  

>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 173 KYGFRTSQLAPVAVSNTVSTTN 108
           K G R SQL  V + N + TTN
Sbjct: 52  KMGLRLSQLIDVNLKNQIMTTN 73


>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 203 ANLGLPDVSYFPGRPVFWLSL 265
           A LGL D  Y  G+ V WL+L
Sbjct: 160 AALGLSDTFYLIGQFVAWLNL 180


>AM085517-1|CAJ30215.1|  339|Anopheles gambiae putative angiotensin
           converting enzymeprecursor protein.
          Length = 339

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = -2

Query: 188 RPVVGKYGFRTSQLAPVAVSNTVSTTNRPIFGGANTGTFSPQSAAGDEEEN 36
           RPV    G  +    P+ V   VS     +   + +  F P     D+EE+
Sbjct: 41  RPVTFPNGEASPTRVPLGVDGVVSGDGSSVHDRSRSERFGPPYDGDDDEED 91


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 228 ETSGSPKFACHRSTARRRQI 169
           E    P  +C RS ARRR+I
Sbjct: 3   ELKRKPTSSCSRSPARRRRI 22


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 167 GFRTSQLAPVAVSNTVSTTN 108
           G + SQL  V++ N V TTN
Sbjct: 60  GLKLSQLIEVSLRNQVMTTN 79


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 245 DVPGNTRRLAALNSHATAARPVVGKYGFRTSQLAPVAVSNTVSTTN 108
           D+  N  RL    S+ T    V+ K G R SQL  + + + + TTN
Sbjct: 42  DLLSNYNRLIRPVSNNTDT--VLVKLGLRLSQLIDLNLKDQILTTN 85


>DQ396551-1|ABD60146.1|  354|Anopheles gambiae adipokinetic hormone
           receptor protein.
          Length = 354

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 3   KSKTMKTSIVLIFLLVACCT 62
           K KT++ +I+++ + V C T
Sbjct: 263 KRKTLRMTIMIVIVFVVCWT 282


>AY298745-1|AAQ63187.1|  354|Anopheles gambiae G-protein coupled
           receptor protein.
          Length = 354

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 3   KSKTMKTSIVLIFLLVACCT 62
           K KT++ +I+++ + V C T
Sbjct: 263 KRKTLRMTIMIVIVFVVCWT 282


>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
          doublesex protein protein.
          Length = 241

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 96 RWCKYRYFQPPKC 58
          R+CKYR  Q  KC
Sbjct: 58 RYCKYRACQCEKC 70


>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
          doublesex protein protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 96 RWCKYRYFQPPKC 58
          R+CKYR  Q  KC
Sbjct: 58 RYCKYRACQCEKC 70


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 200 ATAARPVVGKYGFRTSQLAPVAVSNTVSTTN 108
           A  + P+  K+G    Q+  V   N + TTN
Sbjct: 43  ANESDPLEVKFGLTLQQIIDVDEKNQILTTN 73


>AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR
           protein.
          Length = 460

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 203 ANLGLPDVSYFPGRPVFWLS 262
           A LG+ D  Y  G  V WLS
Sbjct: 79  AALGISDTCYLVGLFVTWLS 98


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -2

Query: 209 NSHATAARPVVGKYGF---RT--SQLAPVAVSNTVSTTNRPIFGGANTGTFSPQSAAGDE 45
           +S A AA   VG++     RT  S L+P + S + S+ +      +     SP+S+A D+
Sbjct: 40  SSSAAAAVVSVGEFTLGPGRTYASALSPSSSSASPSSPSSVASPNSRASNMSPESSASDQ 99


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 447,128
Number of Sequences: 2352
Number of extensions: 9251
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31639662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)