Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0972.Seq
(399 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 34 7e-04
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 0.42
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 1.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.7
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 3.0
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 3.0
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 6.9
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 20 9.1
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 20 9.1
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 33.9 bits (74), Expect = 7e-04
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Frame = +3
Query: 57 CTLGAEST---CICTTE----YRPVCGTNGVTYGNRCQLRCA 161
C L ST C+C + +RPVC +NG Y N C+L A
Sbjct: 93 CELSPNSTIAVCVCMRKCPRRHRPVCASNGKIYANHCELHRA 134
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 24.6 bits (51), Expect = 0.42
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 173 KYGFRTSQLAPVAVSNTVSTTN 108
K G R SQL V + N + TTN
Sbjct: 49 KMGLRLSQLIDVNLKNQIMTTN 70
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.0 bits (47), Expect = 1.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 182 VVGKYGFRTSQLAPVAVSNTVSTTN 108
VV K G R SQL + + + + TTN
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTN 70
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 200 ATAARPVVGKYGFRTSQLAPVAVSNTVSTTN 108
A + P+ K+G Q+ V N + TTN
Sbjct: 6 ANESEPLEVKFGITLQQIIDVDEKNQILTTN 36
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 200 ATAARPVVGKYGFRTSQLAPVAVSNTVSTTN 108
A + P+ K+G Q+ V N + TTN
Sbjct: 6 ANESEPLEVKFGITLQQIIDVDEKNQILTTN 36
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 200 ATAARPVVGKYGFRTSQLAPVAVSNTVSTTN 108
A + P+ K+G Q+ V N + TTN
Sbjct: 6 ANESEPLEVKFGITLQQIIDVDEKNQILTTN 36
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 200 ATAARPVVGKYGFRTSQLAPVAVSNTVSTTN 108
A + P+ K+G Q+ V N + TTN
Sbjct: 6 ANESEPLEVKFGITLQQIIDVDEKNQILTTN 36
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 200 ATAARPVVGKYGFRTSQLAPVAVSNTVSTTN 108
A + P+ K+G Q+ V N + TTN
Sbjct: 6 ANESEPLEVKFGITLQQIIDVDEKNQILTTN 36
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 200 ATAARPVVGKYGFRTSQLAPVAVSNTVSTTN 108
A + P+ K+G Q+ V N + TTN
Sbjct: 6 ANESEPLEVKFGITLQQIIDVDEKNQILTTN 36
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 1.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 200 ATAARPVVGKYGFRTSQLAPVAVSNTVSTTN 108
A + P+ K+G Q+ V N + TTN
Sbjct: 74 ANESEPLEVKFGITLQQIIDVDEKNQILTTN 104
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 1.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 200 ATAARPVVGKYGFRTSQLAPVAVSNTVSTTN 108
A + P+ K+G Q+ V N + TTN
Sbjct: 74 ANESEPLEVKFGITLQQIIDVDEKNQILTTN 104
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 3.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Frame = -2
Query: 254 KIRDVPGNTRRLA--ALNSHATAARPVVG-------KYGFRTSQLAPVAVSNTVSTTN 108
KI + +T+RL L+++ RPV+ + G + SQL + + N V TTN
Sbjct: 26 KIFEANPDTKRLYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTN 83
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 3.0
Identities = 6/17 (35%), Positives = 13/17 (76%)
Frame = -1
Query: 309 EQFEYGTESVPPRHFKL 259
++FEY T ++P H+++
Sbjct: 252 QRFEYFTRTIPSDHYQV 268
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 20.6 bits (41), Expect = 6.9
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Frame = -2
Query: 212 LNSHATAARPVVG-------KYGFRTSQLAPVAVSNTVSTTN 108
L+++ RPVV K + SQL V + N + TTN
Sbjct: 33 LSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTN 74
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 20.2 bits (40), Expect = 9.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 158 TSQLAPVAVSNTVSTTNRPIFG 93
T L+P AVS T + P+ G
Sbjct: 106 TGDLSPAAVSYTSGFYHIPVIG 127
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 20.2 bits (40), Expect = 9.1
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +2
Query: 197 WHANLGLPD 223
WH+NL PD
Sbjct: 407 WHSNLTTPD 415
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,016
Number of Sequences: 438
Number of extensions: 2899
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9885360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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