Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0972.Seq
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40320.1 68418.m04892 DC1 domain-containing protein contains ... 29 1.1
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f... 28 2.0
At1g15580.1 68414.m01873 auxin-responsive protein / indoleacetic... 27 3.5
At3g27510.1 68416.m03439 DC1 domain-containing protein contains ... 27 4.6
At5g37660.1 68418.m04535 receptor-like protein kinase-related si... 27 6.1
At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma mem... 27 6.1
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ... 27 6.1
At3g28650.1 68416.m03576 DC1 domain-containing protein similar ... 27 6.1
At3g10650.1 68416.m01281 expressed protein 27 6.1
At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putati... 27 6.1
At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma m... 27 6.1
At1g15180.1 68414.m01815 MATE efflux family protein contains Pfa... 26 8.0
>At5g40320.1 68418.m04892 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 594
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 246 GRPGKYETSGSPKFACHRSTARRRQIW 166
GR G Y S P +A H A RR +W
Sbjct: 244 GRYGAYSCSICPDYAVHSRCATRRDVW 270
>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 117
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 105 PVCGTNGVTYGNRC-QLRCAKAIFAYDGPCCGG 200
PVCGT+GVTY C C A G C G
Sbjct: 53 PVCGTDGVTYWCGCPDAACHGARVVKKGACDTG 85
>At1g15580.1 68414.m01873 auxin-responsive protein / indoleacetic
acid-induced protein 5 (IAA5) / auxin-induced protein
(AUX2-27) identical to SP|P33078 Auxin-responsive
protein IAA5 (Indoleacetic acid-induced protein 5)
(Auxin-induced protein AUX2-27) {Arabidopsis thaliana}
Length = 163
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 69 PPKCSRRRGGKLERLKSSLFSI 4
PP CS RR LER KSS +
Sbjct: 58 PPVCSYRRKNSLERTKSSYVKV 79
>At3g27510.1 68416.m03439 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 566
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 237 GKYETSGSPKFACHRSTARRRQIW 166
G Y S P++A H A RR +W
Sbjct: 285 GAYSCSVCPRYAIHSLCATRRDVW 308
>At5g37660.1 68418.m04535 receptor-like protein kinase-related
similar to receptor-like protein kinase 4 (GI:13506745)
{Arabidopsis thaliana}; embryonic abundant protein
EMB24, white spruce, PIR:T09251; contains Pfam PF01657:
Domain of unknown function
Length = 288
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 164 FRTSQLAPVAVSNTVSTTNRPIFGGANTGTFSPQSA 57
F + AP ++S+ S T+ +FGG + FSP SA
Sbjct: 18 FLIAATAP-SLSSATSATDTFVFGGCSQQKFSPASA 52
>At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA11)
identical to SP|Q9M2L4|ACAB_ARATH Potential
calcium-transporting ATPase 11, plasma membrane-type (EC
3.6.3.8) (Ca(2+)-ATPase isoform 11) {Arabidopsis
thaliana}; strong similarity to calmodulin-stimulated
calcium-ATPase [Brassica oleracea] GI:1805654
Length = 1025
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 9 KTMKTSIVLIFLLVACCTLGAESTCICT 92
K + + L+ L AC T+G+ STCICT
Sbjct: 424 KQLMSDRALVRHLAACETMGS-STCICT 450
>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
nearly identical to SCARECROW [Arabidopsis thaliana]
GI:1497987
Length = 653
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 2 KIENNEDFNRSNFPPRRLLH 61
++ +N D+N S+ PPRR+ H
Sbjct: 51 EMSSNPDYNNSSRPPRRVSH 70
>At3g28650.1 68416.m03576 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 665
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 237 GKYETSGSPKFACHRSTARRRQIW 166
G Y S P +A H A R+ +W
Sbjct: 320 GAYSCSSCPNYAIHSRCATRKDVW 343
>At3g10650.1 68416.m01281 expressed protein
Length = 1309
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 125 TVSTTNRPIFGGANTGTFSPQSAAG 51
TVS+T PIFG + T SP G
Sbjct: 1128 TVSSTTTPIFGASTNNTPSPSPIFG 1152
>At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putative
similar to delta-8 sphingolipid desaturase GI:3819708
from [Brassica napus]
Length = 449
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 62 FGG*KYLYLHHRI*ACLWY*RCYLRQQVPT--EMCESHICLRRAVLRWHANL 211
FGG ++ HH RC+LR P E+C+ H R++ W AN+
Sbjct: 368 FGGLQFQLEHHLFPRLP---RCHLRTVSPVVKELCKKHNLPYRSLSWWEANV 416
>At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma
membrane-type / Ca2+-ATPase, isoform 4 (ACA4) identical
to SP|O22218 Calcium-transporting ATPase 4, plasma
membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4)
{Arabidopsis thaliana}
Length = 1030
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 9 KTMKTSIVLIFLLVACCTLGAESTCICT 92
K + + L+ L AC T+G+ STCICT
Sbjct: 424 KKLMSDRALVRHLAACETMGS-STCICT 450
>At1g15180.1 68414.m01815 MATE efflux family protein contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 482
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 248 VFWLSLKCLGGTDSVPYSNCSITIVLVFINMLKLTCSSEK 367
V+ L LGG ++ +SNC TI+L + CS +
Sbjct: 207 VYKSGLGNLGGALALSFSNCLYTIILGSLMCFSSACSETR 246
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,166,131
Number of Sequences: 28952
Number of extensions: 191699
Number of successful extensions: 494
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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