Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0971.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9AVH2 Cluster: Putative senescence-associated protein;...    44   0.001
UniRef50_A7RI48 Cluster: Predicted protein; n=1; Nematostella ve...    44   0.003
UniRef50_A5Z3S2 Cluster: Putative uncharacterized protein; n=1; ...    40   0.041
UniRef50_A2RK01 Cluster: Putative uncharacterized protein; n=4; ...    33   4.7  

>UniRef50_Q9AVH2 Cluster: Putative senescence-associated protein;
           n=4; Eukaryota|Rep: Putative senescence-associated
           protein - Pisum sativum (Garden pea)
          Length = 282

 Score = 44.4 bits (100), Expect = 0.001
 Identities = 21/39 (53%), Positives = 22/39 (56%)
 Frame = +2

Query: 368 HQ*GKTXLSHDGLNPAHVSLLMGEQSNAWRICFAMIGRS 484
           HQ GKT LSHDGL PAHV             CF MIGR+
Sbjct: 57  HQWGKTNLSHDGLIPAHVPYWWVNNPTLGEFCFTMIGRA 95



 Score = 40.3 bits (90), Expect = 0.023
 Identities = 29/80 (36%), Positives = 30/80 (37%)
 Frame = +3

Query: 255 NPADGSFXXXXXXXXXXTKCXKLRXLXY*AV*LSQRQAISRVKXXXXXXXXXXXXFPF*W 434
           NP  GSF          T C   R L Y  V L  R      K             P+ W
Sbjct: 20  NPTHGSFAPLAFQPSAMTNCANQRFLSY-YVELLLRHCHQWGKTNLSHDGLIPAHVPYWW 78

Query: 435 VNNPTLGEFASQ**EEADIE 494
           VNNPTLGEF       ADIE
Sbjct: 79  VNNPTLGEFCFTMIGRADIE 98


>UniRef50_A7RI48 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 746

 Score = 43.6 bits (98), Expect = 0.003
 Identities = 19/30 (63%), Positives = 23/30 (76%)
 Frame = -2

Query: 354 IVILLSTRXTAVSXIWFMHSXERPVVRSYH 265
           +VILLSTR TA S  W +H  E+P+VRSYH
Sbjct: 660 VVILLSTRGTADSDNWHLHLAEKPMVRSYH 689


>UniRef50_A5Z3S2 Cluster: Putative uncharacterized protein; n=1;
           Eubacterium ventriosum ATCC 27560|Rep: Putative
           uncharacterized protein - Eubacterium ventriosum ATCC
           27560
          Length = 98

 Score = 39.5 bits (88), Expect = 0.041
 Identities = 20/41 (48%), Positives = 24/41 (58%)
 Frame = +2

Query: 332 LVLSSMTIATTSHQ*GKTXLSHDGLNPAHVSLLMGEQSNAW 454
           LVL +  +   +    +  LSHD LNPA V LLMGEQ N W
Sbjct: 32  LVLRTAPLKYPTPTPDRDELSHDVLNPARVPLLMGEQPNPW 72


>UniRef50_A2RK01 Cluster: Putative uncharacterized protein; n=4;
           Lactococcus lactis subsp. cremoris|Rep: Putative
           uncharacterized protein - Lactococcus lactis subsp.
           cremoris (strain MG1363)
          Length = 796

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 274 SHHRPLGRVHEPNVRNCGXSXTEQYDYRNDK 366
           SHH P+GR H+  +RN G      +DY +++
Sbjct: 240 SHHEPMGRNHQEWIRNHGQYGNGDWDYESNQ 270


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 424,239,852
Number of Sequences: 1657284
Number of extensions: 6942074
Number of successful extensions: 14599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14595
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)