Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0971.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    27   5.7  
AF106573-5|AAF02104.2|  358|Caenorhabditis elegans Seven tm rece...    27   7.6  
AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    27   7.6  
U41545-8|AAK66022.2|  115|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 296 RPSGRWCEATIRGIXLNASKAEAS 225
           RPSG WC     G+ L  ++ EAS
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEAS 58


>U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical
           protein K09H11.1 protein.
          Length = 985

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 32  YIRTFXAVMHVLRKKPXASIXAIQXGFDVASRVXNA 139
           YIRT     +VLRKKP  S+       D   ++ NA
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNA 299


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 296 RPSGRWCEATIRGIXLNASKAEASLAESGKDMLTVEPRE 180
           RPSG WC     GI     +AE + A  G  +  ++ R+
Sbjct: 93  RPSGGWCMRVFTGIHDAKIEAERACAAKGGTLTGLQNRD 131


>AF106573-5|AAF02104.2|  358|Caenorhabditis elegans Seven tm
           receptor protein 79 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 476 LSLRSKFAKRWIVHPSKGKRELGLARRE 393
           LSL ++FA RWIV  + GK      R+E
Sbjct: 110 LSLNAQFAFRWIVMSNSGKNLFWRFRKE 137


>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 296 RPSGRWCEATIRGIXLNASKAEASLAESGKDMLTVEPR 183
           RPSG WC     G     + AE S    G  +  ++ R
Sbjct: 49  RPSGGWCMRVFEGFNAAKTDAEKSCKSVGSTLSGIQNR 86


>U41545-8|AAK66022.2|  115|Caenorhabditis elegans Hypothetical
           protein C02F12.9 protein.
          Length = 115

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +1

Query: 232 SALEAFRXIPRMVASHHRPLGRVHEPNVRNCGXSXTEQYDYRNDKPSVG*NXPVSRRAKP 411
           + LE  R  P + A+H + + R HE + +      + + +   D+P V  + P  RR+ P
Sbjct: 22  TTLEDRRIAPSLKANHVKKILRKHEQSQKPVEPDHSPRTNLVVDRPPVTRHTP-RRRSLP 80

Query: 412 SSRFPFDG 435
               P  G
Sbjct: 81  KEESPRSG 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,554,340
Number of Sequences: 27780
Number of extensions: 155841
Number of successful extensions: 308
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)