Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0970.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    29   0.60 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   2.4  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   5.6  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   9.7  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    25   9.7  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   9.7  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   9.7  

>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 102 PDPFFAQPTVGNGYEP-IDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQADLTSSLP 278
           P P  A   + +   P +++ PY+ N   D+N NGN   P+   +Y         T  LP
Sbjct: 353 PQPASAMKPMASPMLPNVNSMPYLSNG--DHNNNGNTSSPVSRFSYGQHTSNVPSTQKLP 410

Query: 279 LSLVLAVGS 305
            +  +  G+
Sbjct: 411 SNFRVTQGA 419


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +3

Query: 123 PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQADLTSSLPLSLV 290
           P     Y P ++ P  ++ P+  N NG     +    +   +P     S LPLS++
Sbjct: 206 PDFNQNY-PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVM 260


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 450 RYPIRPIVSRITIHWPSFYKVVTGKTL 530
           RY +  +  +  + W   YK +TG TL
Sbjct: 344 RYQLETVYRKTLLEWEDLYKRLTGVTL 370


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 156 NRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQADLTSSLPLSL 287
           N PY +    D        E +D    YV   ++ +T S PLS+
Sbjct: 183 NLPYFIAANNDLGKKDFANEILDQCEIYVRHRKSSITLSNPLSI 226


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 459 IRPIVSRITIHWPSFYKVVTGKTLAFPT 542
           + P   R+ ++WP+  K++    LAF T
Sbjct: 80  LEPSDPRLAVNWPTHVKILHVALLAFTT 107


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 187 TTTLMETATNLSTTVHITWTVPKPT 261
           TT    T+T  +TT   T T P+PT
Sbjct: 144 TTANRTTSTPTTTTARTTRTTPRPT 168


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 214 NLSTTVHITWTVPKPTLLQAYP 279
           +L   VH   T+P PT+L  YP
Sbjct: 84  SLKNVVHEGQTIPPPTVLPWYP 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,748
Number of Sequences: 5004
Number of extensions: 46963
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)