BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0970.Seq (548 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 29 0.60 SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 2.4 SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 25 5.6 SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 25 9.7 SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 25 9.7 SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 9.7 SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 9.7 >SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizosaccharomyces pombe|chr 3|||Manual Length = 650 Score = 28.7 bits (61), Expect = 0.60 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Frame = +3 Query: 102 PDPFFAQPTVGNGYEP-IDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQADLTSSLP 278 P P A + + P +++ PY+ N D+N NGN P+ +Y T LP Sbjct: 353 PQPASAMKPMASPMLPNVNSMPYLSNG--DHNNNGNTSSPVSRFSYGQHTSNVPSTQKLP 410 Query: 279 LSLVLAVGS 305 + + G+ Sbjct: 411 SNFRVTQGA 419 >SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 428 Score = 26.6 bits (56), Expect = 2.4 Identities = 14/56 (25%), Positives = 24/56 (42%) Frame = +3 Query: 123 PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQADLTSSLPLSLV 290 P Y P ++ P ++ P+ N NG + + +P S LPLS++ Sbjct: 206 PDFNQNY-PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVM 260 >SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces pombe|chr 1|||Manual Length = 612 Score = 25.4 bits (53), Expect = 5.6 Identities = 9/27 (33%), Positives = 14/27 (51%) Frame = +3 Query: 450 RYPIRPIVSRITIHWPSFYKVVTGKTL 530 RY + + + + W YK +TG TL Sbjct: 344 RYQLETVYRKTLLEWEDLYKRLTGVTL 370 >SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 780 Score = 24.6 bits (51), Expect = 9.7 Identities = 13/44 (29%), Positives = 19/44 (43%) Frame = +3 Query: 156 NRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQADLTSSLPLSL 287 N PY + D E +D YV ++ +T S PLS+ Sbjct: 183 NLPYFIAANNDLGKKDFANEILDQCEIYVRHRKSSITLSNPLSI 226 >SPBC36.03c |||spermidine family transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 538 Score = 24.6 bits (51), Expect = 9.7 Identities = 9/28 (32%), Positives = 16/28 (57%) Frame = +3 Query: 459 IRPIVSRITIHWPSFYKVVTGKTLAFPT 542 + P R+ ++WP+ K++ LAF T Sbjct: 80 LEPSDPRLAVNWPTHVKILHVALLAFTT 107 >SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 2|||Manual Length = 786 Score = 24.6 bits (51), Expect = 9.7 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +1 Query: 187 TTTLMETATNLSTTVHITWTVPKPT 261 TT T+T +TT T T P+PT Sbjct: 144 TTANRTTSTPTTTTARTTRTTPRPT 168 >SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual Length = 674 Score = 24.6 bits (51), Expect = 9.7 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +1 Query: 214 NLSTTVHITWTVPKPTLLQAYP 279 +L VH T+P PT+L YP Sbjct: 84 SLKNVVHEGQTIPPPTVLPWYP 105 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,231,748 Number of Sequences: 5004 Number of extensions: 46963 Number of successful extensions: 120 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 120 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 227943826 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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