Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0970.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712...    29   2.4  
01_05_0274 - 20293963-20294065,20294501-20294560,20295006-202950...    27   7.5  
10_01_0239 + 2502980-2503462                                           27   9.9  
08_02_0193 - 14073103-14073246,14073332-14073481,14073571-140736...    27   9.9  

>02_02_0140 +
           7125914-7126264,7126426-7126677,7126766-7126861,
           7127013-7127187,7127283-7127363,7127451-7127548,
           7127828-7127920,7128607-7128678,7128998-7129117,
           7129210-7129260,7130026-7130211,7130355-7130411
          Length = 543

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 245 PSPSRPYFKPTPFPGARG 298
           PSP RP   P+P PG RG
Sbjct: 38  PSPPRPPSPPSPLPGGRG 55


>01_05_0274 -
           20293963-20294065,20294501-20294560,20295006-20295052,
           20296065-20296155,20296276-20296427,20296891-20297049,
           20297132-20297381,20298255-20298317,20298394-20298566
          Length = 365

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 181 PKTTTLMET-ATNLSTTVHITWTVPKPTLLQAYP 279
           P TT ++    T LSTT    WTV +  +L+ YP
Sbjct: 137 PATTWILGIFLTTLSTTCWALWTVLQGPMLEVYP 170


>10_01_0239 + 2502980-2503462
          Length = 160

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 164 RAVVNRFVAVSYSRLGKEWIGVIDHNLSVGHSQQSEDENHEEF 36
           R   N   ++     GK + G+ID N +V   + S  ++ EEF
Sbjct: 42  RTTSNYSTSLGNGSFGKVYNGIIDDNTAVAVKRYSRIDSEEEF 84


>08_02_0193 -
           14073103-14073246,14073332-14073481,14073571-14073640,
           14073900-14074021,14074260-14074395,14074492-14074967
          Length = 365

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 242 GPSPSRPYFKPTPFPGAR 295
           GPSP  PYF P P P  R
Sbjct: 42  GPSPVAPYFAPPPPPLCR 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,392,422
Number of Sequences: 37544
Number of extensions: 338088
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)