BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0970.Seq (548 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712... 29 2.4 01_05_0274 - 20293963-20294065,20294501-20294560,20295006-202950... 27 7.5 10_01_0239 + 2502980-2503462 27 9.9 08_02_0193 - 14073103-14073246,14073332-14073481,14073571-140736... 27 9.9 >02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861, 7127013-7127187,7127283-7127363,7127451-7127548, 7127828-7127920,7128607-7128678,7128998-7129117, 7129210-7129260,7130026-7130211,7130355-7130411 Length = 543 Score = 29.1 bits (62), Expect = 2.4 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +2 Query: 245 PSPSRPYFKPTPFPGARG 298 PSP RP P+P PG RG Sbjct: 38 PSPPRPPSPPSPLPGGRG 55 >01_05_0274 - 20293963-20294065,20294501-20294560,20295006-20295052, 20296065-20296155,20296276-20296427,20296891-20297049, 20297132-20297381,20298255-20298317,20298394-20298566 Length = 365 Score = 27.5 bits (58), Expect = 7.5 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 181 PKTTTLMET-ATNLSTTVHITWTVPKPTLLQAYP 279 P TT ++ T LSTT WTV + +L+ YP Sbjct: 137 PATTWILGIFLTTLSTTCWALWTVLQGPMLEVYP 170 >10_01_0239 + 2502980-2503462 Length = 160 Score = 27.1 bits (57), Expect = 9.9 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = -1 Query: 164 RAVVNRFVAVSYSRLGKEWIGVIDHNLSVGHSQQSEDENHEEF 36 R N ++ GK + G+ID N +V + S ++ EEF Sbjct: 42 RTTSNYSTSLGNGSFGKVYNGIIDDNTAVAVKRYSRIDSEEEF 84 >08_02_0193 - 14073103-14073246,14073332-14073481,14073571-14073640, 14073900-14074021,14074260-14074395,14074492-14074967 Length = 365 Score = 27.1 bits (57), Expect = 9.9 Identities = 11/18 (61%), Positives = 11/18 (61%) Frame = +2 Query: 242 GPSPSRPYFKPTPFPGAR 295 GPSP PYF P P P R Sbjct: 42 GPSPVAPYFAPPPPPLCR 59 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,392,422 Number of Sequences: 37544 Number of extensions: 338088 Number of successful extensions: 784 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 755 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 784 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1233951264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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