Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0970.Seq
         (548 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest...    30   4.6  
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest...    30   4.6  
D83492-1|BAA21560.1| 1006|Homo sapiens Eph-family protein protein.     29   8.1  
BC110607-1|AAI10608.2| 1006|Homo sapiens EPH receptor B6 protein.      29   8.1  
BC110606-1|AAI10607.1|  729|Homo sapiens EPHB6 protein protein.        29   8.1  
AY280502-1|AAP20939.1| 1006|Homo sapiens EPHB6 protein.                29   8.1  
AF107256-1|AAD03058.1|  804|Homo sapiens Eph-family protein prot...    29   8.1  

>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
 Frame = +3

Query: 123  PTVGNGYEPIDNRPYIVNP----PKDYNPNGNGYEPIDNGAYYVDRPQADLTS 269
            PT G+   P  + PYI +P       Y+P    YEP   G Y    P    TS
Sbjct: 1567 PTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTS 1619


>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
 Frame = +3

Query: 123  PTVGNGYEPIDNRPYIVNP----PKDYNPNGNGYEPIDNGAYYVDRPQADLTS 269
            PT G+   P  + PYI +P       Y+P    YEP   G Y    P    TS
Sbjct: 1567 PTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTS 1619


>D83492-1|BAA21560.1| 1006|Homo sapiens Eph-family protein protein.
          Length = 1006

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 207 GYEPIDNGAYYVDRPQADLTSSLPLSLVLAVGS 305
           G+ P     Y+   PQ +L+S LP  L L +GS
Sbjct: 552 GHGPYGGKVYFQTLPQGELSSQLPERLSLVIGS 584


>BC110607-1|AAI10608.2| 1006|Homo sapiens EPH receptor B6 protein.
          Length = 1006

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 207 GYEPIDNGAYYVDRPQADLTSSLPLSLVLAVGS 305
           G+ P     Y+   PQ +L+S LP  L L +GS
Sbjct: 552 GHGPYGGKVYFQTLPQGELSSQLPERLSLVIGS 584


>BC110606-1|AAI10607.1|  729|Homo sapiens EPHB6 protein protein.
          Length = 729

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 207 GYEPIDNGAYYVDRPQADLTSSLPLSLVLAVGS 305
           G+ P     Y+   PQ +L+S LP  L L +GS
Sbjct: 275 GHGPYGGKVYFQTLPQGELSSQLPERLSLVIGS 307


>AY280502-1|AAP20939.1| 1006|Homo sapiens EPHB6 protein.
          Length = 1006

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 207 GYEPIDNGAYYVDRPQADLTSSLPLSLVLAVGS 305
           G+ P     Y+   PQ +L+S LP  L L +GS
Sbjct: 552 GHGPYGGKVYFQTLPQGELSSQLPERLSLVIGS 584


>AF107256-1|AAD03058.1|  804|Homo sapiens Eph-family protein
           protein.
          Length = 804

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 207 GYEPIDNGAYYVDRPQADLTSSLPLSLVLAVGS 305
           G+ P     Y+   PQ +L+S LP  L L +GS
Sbjct: 552 GHGPYGGKVYFQTLPQGELSSQLPERLSLVIGS 584


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,717,940
Number of Sequences: 237096
Number of extensions: 1875257
Number of successful extensions: 8719
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8715
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)