BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0970.Seq (548 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 30 4.6 X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 30 4.6 D83492-1|BAA21560.1| 1006|Homo sapiens Eph-family protein protein. 29 8.1 BC110607-1|AAI10608.2| 1006|Homo sapiens EPH receptor B6 protein. 29 8.1 BC110606-1|AAI10607.1| 729|Homo sapiens EPHB6 protein protein. 29 8.1 AY280502-1|AAP20939.1| 1006|Homo sapiens EPHB6 protein. 29 8.1 AF107256-1|AAD03058.1| 804|Homo sapiens Eph-family protein prot... 29 8.1 >X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest subunit protein. Length = 1970 Score = 30.3 bits (65), Expect = 4.6 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%) Frame = +3 Query: 123 PTVGNGYEPIDNRPYIVNP----PKDYNPNGNGYEPIDNGAYYVDRPQADLTS 269 PT G+ P + PYI +P Y+P YEP G Y P TS Sbjct: 1567 PTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTS 1619 >X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest subunit protein. Length = 1970 Score = 30.3 bits (65), Expect = 4.6 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%) Frame = +3 Query: 123 PTVGNGYEPIDNRPYIVNP----PKDYNPNGNGYEPIDNGAYYVDRPQADLTS 269 PT G+ P + PYI +P Y+P YEP G Y P TS Sbjct: 1567 PTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTS 1619 >D83492-1|BAA21560.1| 1006|Homo sapiens Eph-family protein protein. Length = 1006 Score = 29.5 bits (63), Expect = 8.1 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +3 Query: 207 GYEPIDNGAYYVDRPQADLTSSLPLSLVLAVGS 305 G+ P Y+ PQ +L+S LP L L +GS Sbjct: 552 GHGPYGGKVYFQTLPQGELSSQLPERLSLVIGS 584 >BC110607-1|AAI10608.2| 1006|Homo sapiens EPH receptor B6 protein. Length = 1006 Score = 29.5 bits (63), Expect = 8.1 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +3 Query: 207 GYEPIDNGAYYVDRPQADLTSSLPLSLVLAVGS 305 G+ P Y+ PQ +L+S LP L L +GS Sbjct: 552 GHGPYGGKVYFQTLPQGELSSQLPERLSLVIGS 584 >BC110606-1|AAI10607.1| 729|Homo sapiens EPHB6 protein protein. Length = 729 Score = 29.5 bits (63), Expect = 8.1 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +3 Query: 207 GYEPIDNGAYYVDRPQADLTSSLPLSLVLAVGS 305 G+ P Y+ PQ +L+S LP L L +GS Sbjct: 275 GHGPYGGKVYFQTLPQGELSSQLPERLSLVIGS 307 >AY280502-1|AAP20939.1| 1006|Homo sapiens EPHB6 protein. Length = 1006 Score = 29.5 bits (63), Expect = 8.1 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +3 Query: 207 GYEPIDNGAYYVDRPQADLTSSLPLSLVLAVGS 305 G+ P Y+ PQ +L+S LP L L +GS Sbjct: 552 GHGPYGGKVYFQTLPQGELSSQLPERLSLVIGS 584 >AF107256-1|AAD03058.1| 804|Homo sapiens Eph-family protein protein. Length = 804 Score = 29.5 bits (63), Expect = 8.1 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +3 Query: 207 GYEPIDNGAYYVDRPQADLTSSLPLSLVLAVGS 305 G+ P Y+ PQ +L+S LP L L +GS Sbjct: 552 GHGPYGGKVYFQTLPQGELSSQLPERLSLVIGS 584 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 81,717,940 Number of Sequences: 237096 Number of extensions: 1875257 Number of successful extensions: 8719 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 8447 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8715 length of database: 76,859,062 effective HSP length: 86 effective length of database: 56,468,806 effective search space used: 5421005376 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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