Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0970.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21319-7|AAL16307.1|  469|Caenorhabditis elegans Hypothetical pr...    33   0.14 
Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical p...    30   1.3  
U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    29   1.7  
AC103567-1|AAL77192.1|  189|Caenorhabditis elegans Hypothetical ...    29   1.7  
U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U39674-2|AAY86211.1|   94|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U00046-2|AAN65304.1|  860|Caenorhabditis elegans Temporarily ass...    27   8.9  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    27   8.9  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     27   8.9  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     27   8.9  

>U21319-7|AAL16307.1|  469|Caenorhabditis elegans Hypothetical
           protein C30G12.1 protein.
          Length = 469

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 187 TTTLMETATNLSTTVHITWTVPKPTLLQAYPFPWCSR 297
           TTT M T T  ST +  T T P+   LQ  PF   +R
Sbjct: 294 TTTTMTTTTRTSTAIPTTTTTPRQISLQTIPFSTTTR 330


>Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = +3

Query: 120 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQADLTS 269
           QP VGN Y+P    P   +PP  Y     GY P   G      P    TS
Sbjct: 91  QPLVGNSYDP----PVRFDPPYAYRATATGYMPTVPGLSTNSSPYYPRTS 136


>Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical
           protein M04G12.4b protein.
          Length = 550

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = +3

Query: 120 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQADLTS 269
           QP VGN Y+P    P   +PP  Y     GY P   G      P    TS
Sbjct: 62  QPLVGNSYDP----PVRFDPPYAYRATATGYMPTVPGLSTNSSPYYPRTS 107


>Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = +3

Query: 120 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQADLTS 269
           QP VGN Y+P    P   +PP  Y     GY P   G      P    TS
Sbjct: 91  QPLVGNSYDP----PVRFDPPYAYRATATGYMPTVPGLSTNSSPYYPRTS 136


>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 196 LMETATNLSTTV--HITWTVPKPTLLQAYP 279
           LME A +L TTV  H+T+  P P L Q+ P
Sbjct: 397 LMENAEHLRTTVQTHVTYNAPPPPLPQSGP 426


>AC103567-1|AAL77192.1|  189|Caenorhabditis elegans Hypothetical
           protein Y51F10.7 protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 390 NSGREFDIKLIDTVDLEGGPRYPIRP 467
           + G +F I  I T+D +G P YPI P
Sbjct: 44  SDGEQFSITDIQTLDSKGNPLYPIDP 69


>U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical
           protein F10G7.6 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 144 EPIDNRPYI-VNPPKDYNPNGNGYEPIDNG 230
           EP D  P + V PP  + PN NG  P  NG
Sbjct: 239 EPDDPAPPLPVAPPPLHGPNNNGNGPAQNG 268


>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 181 PKTTTLMETATNLSTTVHITWTVPKPT 261
           P TTT + + T  STT   T T PKPT
Sbjct: 597 PSTTTTVPSTTPTSTTTTTT-TTPKPT 622


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 181 PKTTTLMETATNLSTTVHITWTVPKPT 261
           P TTT + + T  STT   T T PKPT
Sbjct: 597 PSTTTTVPSTTPTSTTTTTT-TTPKPT 622


>U39674-2|AAY86211.1|   94|Caenorhabditis elegans Hypothetical
           protein C06E2.9 protein.
          Length = 94

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 3   RPRITRDHIKMKFF--MIFVLALLAMANAQVVIND 101
           R +I  D+ KM+F   +IFV ALL+ A +Q  I+D
Sbjct: 5   RQKIIFDNSKMRFITVLIFVFALLSKAVSQDFIDD 39


>U00046-2|AAN65304.1|  860|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform c protein.
          Length = 860

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 460 IGYRGPPSRSTVSISLISNSRPL 392
           IGY G    S +S+S+++N RPL
Sbjct: 566 IGYLGGIEISEISVSILNNGRPL 588


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 460  IGYRGPPSRSTVSISLISNSRPL 392
            IGY G    S +S+S+++N RPL
Sbjct: 2237 IGYLGGIEISEISVSILNNGRPL 2259


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 460  IGYRGPPSRSTVSISLISNSRPL 392
            IGY G    S +S+S+++N RPL
Sbjct: 2179 IGYLGGIEISEISVSILNNGRPL 2201


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 460  IGYRGPPSRSTVSISLISNSRPL 392
            IGY G    S +S+S+++N RPL
Sbjct: 2361 IGYLGGIEISEISVSILNNGRPL 2383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,474,747
Number of Sequences: 27780
Number of extensions: 272477
Number of successful extensions: 847
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)