Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0970.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   0.22 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.7  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   3.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   6.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.2  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = -1

Query: 479 TTHYRANWVPGPPLXVDGIDKLDIEFAAAIYSVDINSYEILKYIVNTL--FRY*FSKIFF 306
           T   R + +  PP  ++ I+ +++   A IY++  N  + L++ V+ +  FRY  +++ F
Sbjct: 18  TNDCRYDKMTRPPGEINSINPINVYTKAYIYTIKSNMAKTLQFDVHMMLQFRYLDARLKF 77

Query: 305 TS 300
           ++
Sbjct: 78  SN 79


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 192 NPNGNGYEPIDNGAYYVDRPQADLTSS 272
           N  GN  +  D+GA   DRP A  +S+
Sbjct: 254 NAAGNNEDSSDSGAAASDRPPASASSN 280


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 139 PFPTVGWAKNGSGSLITT 86
           P+P   WAKN + S IT+
Sbjct: 107 PYPNWSWAKNQNCSGITS 124


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 45  MIFVLALLAMANAQVVINDP 104
           ++ +LALL +A  ++  NDP
Sbjct: 5   IVLLLALLTLAAGEIAHNDP 24


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 104 RSILCPAYCRKRLRT 148
           +SI+C  +C++R  T
Sbjct: 74  KSIICKCFCKRRTNT 88


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 104 RSILCPAYCRKRLRT 148
           +SI+C  +C++R  T
Sbjct: 522 KSIICKCFCKRRTNT 536


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 518 SHDLVKRRPVNCNTTHYRANWVPGP 444
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 187 TTTLMETATNLSTTVHITWTVPKP 258
           TTT   T T  +TT + + T P P
Sbjct: 668 TTTTTTTTTTPNTTQNASATTPPP 691


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 139 PFPTVGWAKNGSGSLITT 86
           P+P   WAKN + S IT+
Sbjct: 104 PYPDWTWAKNENCSGITS 121


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 44  HDFRPRSAGYGQRSSCDQ 97
           HDF+  S+ Y +  SC +
Sbjct: 222 HDFQHTSSRYSRERSCSR 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,857
Number of Sequences: 438
Number of extensions: 4057
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)