Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0970.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19170.1 68415.m02237 subtilase family protein contains simil...    28   3.6  
At1g72110.1 68414.m08335 expressed protein                             28   3.6  
At2g33430.1 68415.m04097 plastid developmental protein DAG, puta...    28   4.7  
At3g31540.1 68416.m04025 hypothetical protein                          27   6.2  
At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putati...    27   8.3  
At2g16460.1 68415.m01885 expressed protein                             27   8.3  

>At2g19170.1 68415.m02237 subtilase family protein contains
           similarity to meiotic serine proteinase TMP GI:6468325
           from [Lycopersicon esculentum]
          Length = 815

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 27  IKMKFFMIFVLALLAMANAQVVINDPDPFFAQPTVGNGYE 146
           I ++ F++FVL +   A   +V  + DP  +     NG+E
Sbjct: 3   IGLRIFVVFVLLVAVTAEVYIVTMEGDPIISYKGGENGFE 42


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 374 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 279
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


>At2g33430.1 68415.m04097 plastid developmental protein DAG,
           putative similar to DAG protein, chloroplast precursor
           [Garden snapdragon] SWISS-PROT:Q38732
          Length = 219

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 192 NPNGNGYEPIDNGAYYVDRPQADLTSSLP 278
           N +G+ Y P+++G+ + DRP  ++    P
Sbjct: 52  NRSGSTYSPLNSGSNFSDRPPTEMAPLFP 80


>At3g31540.1 68416.m04025 hypothetical protein
          Length = 699

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 175 ILPKTTTLMETATNLSTTVHITWTVPKPTLLQAY 276
           +LP   TL+E+     TT H  W V     ++AY
Sbjct: 491 LLPPLDTLLESRKYDETTSHFLWVVGSMNRMEAY 524


>At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]; oxidosqualene cyclase; also highly
           similar to beta-amyrin synthase, lupeol synthase,
           cycloartenol synthase
          Length = 729

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
 Frame = +3

Query: 120 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY-YVDR----PQAD-LTSSLPL 281
           +PT+  GY  +    +  NPP DY    N +  I  G + Y D+    P +D ++ SL  
Sbjct: 438 RPTLIKGYSYLRKSQFTENPPGDYI---NMFRDISKGGWGYSDKDQGWPVSDCISESLEC 494

Query: 282 SLVLAVGSKEYL 317
            L+    S E++
Sbjct: 495 CLIFESMSSEFI 506


>At2g16460.1 68415.m01885 expressed protein
          Length = 230

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 422 DKLDIEFAAAIYSVDINSYEILKYIVNTL 336
           +KLD E  A    ++ + YE++KY + TL
Sbjct: 187 NKLDREIHALRAQLEASKYEVIKYCIGTL 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,840,979
Number of Sequences: 28952
Number of extensions: 254438
Number of successful extensions: 713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)