Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0969.Seq
         (571 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E46476 Cluster: PREDICTED: similar to Serase-1B,...    33   3.6  
UniRef50_A7RPY8 Cluster: Predicted protein; n=1; Nematostella ve...    32   8.2  

>UniRef50_UPI0000E46476 Cluster: PREDICTED: similar to Serase-1B,
           partial; n=6; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to Serase-1B, partial -
           Strongylocentrotus purpuratus
          Length = 566

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = -2

Query: 198 NCLLSSVVSTVLEISRQTLTSPNYKNEFFRNIFYT 94
           NC++S V  TV E   ++++SPNY NE+  N +YT
Sbjct: 120 NCIVSVVNLTVGET--RSISSPNYPNEYPNNAYYT 152


>UniRef50_A7RPY8 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 808

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 340 KWKHCKKT*IPPLWFLIPHLIHGGKKAGPTK 248
           +W+HCK+  +PP+    P+LI G KK   T+
Sbjct: 733 RWQHCKRIGLPPIINKPPNLIAGDKKLFSTQ 763


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,069,179
Number of Sequences: 1657284
Number of extensions: 11231012
Number of successful extensions: 22480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22475
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)