BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0969.Seq (571 letters) Database: tribolium 336 sequences; 122,585 total letters Searching.......................................................done Score E Sequences producing significant alignments: (bits) Value EU019711-1|ABU25223.1| 534|Tribolium castaneum chitin deacetyla... 26 0.26 AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicas... 21 5.6 AM292354-1|CAL23166.1| 321|Tribolium castaneum gustatory recept... 21 7.4 >EU019711-1|ABU25223.1| 534|Tribolium castaneum chitin deacetylase 1 protein. Length = 534 Score = 25.8 bits (54), Expect = 0.26 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 6/31 (19%) Frame = -1 Query: 310 PPLW-----FLIPHLIHGGKKAGPTKC-KVW 236 PPLW F +PH HG ++ PT+ VW Sbjct: 334 PPLWPYTMYFRMPHRCHGNLQSCPTRSHAVW 364 >AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicase protein. Length = 580 Score = 21.4 bits (43), Expect = 5.6 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -1 Query: 295 LIPHLIHGGKKAGPTK 248 L PHL+ KK+G TK Sbjct: 165 LRPHLLENVKKSGYTK 180 >AM292354-1|CAL23166.1| 321|Tribolium castaneum gustatory receptor candidate 33 protein. Length = 321 Score = 21.0 bits (42), Expect = 7.4 Identities = 7/34 (20%), Positives = 17/34 (50%) Frame = -3 Query: 197 IVCYPLWYQQYWRLVVRPLQVQTTKMNFSEIYFI 96 I+ Y W ++YW + L++ + +Y++ Sbjct: 69 ILAYNFWKKKYWSEFLANLKLLKGRKIRKNLYYL 102 Database: tribolium Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 122,585 Number of sequences in database: 336 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 141,287 Number of Sequences: 336 Number of extensions: 3167 Number of successful extensions: 3 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3 length of database: 122,585 effective HSP length: 54 effective length of database: 104,441 effective search space used: 14099535 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -