Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0969.Seq
         (571 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    26   0.26 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   5.6  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   7.4  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
 Frame = -1

Query: 310 PPLW-----FLIPHLIHGGKKAGPTKC-KVW 236
           PPLW     F +PH  HG  ++ PT+   VW
Sbjct: 334 PPLWPYTMYFRMPHRCHGNLQSCPTRSHAVW 364


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 295 LIPHLIHGGKKAGPTK 248
           L PHL+   KK+G TK
Sbjct: 165 LRPHLLENVKKSGYTK 180


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/34 (20%), Positives = 17/34 (50%)
 Frame = -3

Query: 197 IVCYPLWYQQYWRLVVRPLQVQTTKMNFSEIYFI 96
           I+ Y  W ++YW   +  L++   +     +Y++
Sbjct: 69  ILAYNFWKKKYWSEFLANLKLLKGRKIRKNLYYL 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,287
Number of Sequences: 336
Number of extensions: 3167
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)