Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0969.Seq
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803...    28   6.0  
08_02_0601 + 19177129-19177245,19178231-19179103                       27   8.0  
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193...    27   8.0  

>02_02_0490 -
           10879761-10879861,10879946-10880185,10880274-10880337,
           10880426-10880731,10881098-10881312,10881417-10881711,
           10882193-10882357,10882477-10882527,10882657-10883109,
           10883195-10883281,10883736-10884800,10884858-10885376
          Length = 1186

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 203 VPIVCYPLWYQQYWRLVVRPLQ 138
           VPI+   LWYQQY+    R LQ
Sbjct: 770 VPIIAASLWYQQYYIDGARELQ 791


>08_02_0601 + 19177129-19177245,19178231-19179103
          Length = 329

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 354 VLCWRTMASSGARTAGATNIHFIPRSSYIQVRWN 455
           V CWR+ A  G   AG   +  + + S ++  W+
Sbjct: 23  VYCWRSTAVPGGTAAGEVKLDILIKQSKMEYIWS 56


>01_06_0873 + 32617428-32617532,32618166-32618234,32619195-32619380,
            32619687-32619776,32620389-32620462,32621149-32621260,
            32621413-32621468,32621826-32621880,32621965-32622021,
            32622696-32622797,32623467-32623547,32623756-32623808,
            32625245-32625314,32626540-32626603,32627339-32627487,
            32627564-32627719,32628011-32628108,32628763-32628847,
            32628932-32628997,32629066-32629125,32629408-32629494,
            32630307-32630360,32630538-32630576,32630651-32630779,
            32630859-32630911,32630984-32631032,32632240-32632298,
            32633111-32633259,32633338-32633492,32633719-32633847,
            32633932-32634017,32634220-32634335,32634429-32634541,
            32635335-32635458,32635540-32635658,32636289-32636490,
            32636586-32636757,32637852-32638176,32638442-32638529,
            32638970-32639059,32639169-32639370,32639681-32639705
          Length = 1450

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 192  LLSSVVSTVLEISRQTL-TSPNYKNE 118
            L SS V +VL+I    L TSPNYKN+
Sbjct: 1005 LESSYVKSVLDIYELVLQTSPNYKND 1030


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,121,562
Number of Sequences: 37544
Number of extensions: 310967
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)