Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0969.Seq
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21185| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_47098| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         29   3.5  
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)           28   6.2  
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              27   8.2  

>SB_21185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 413 DVGGARRAGSTRRHSSPAQHSELF*VETL*KNLNPSTVVSNTPPD 279
           D  GA R    R H    QHS  + +++   N + S ++SN+PPD
Sbjct: 105 DHNGADRLEMARDHPRVVQHSR-YNLQSWRANCDLSVILSNSPPD 148


>SB_47098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 280 IHGGKKAGPTKCKVWITINISTKGLACQLFVILCGINSI 164
           + G K  G  KC  W+   I  KG    LF+IL  +N+I
Sbjct: 115 LEGTKIKGTLKCLTWVKKKIKKKGAIFPLFMIL--VNTI 151


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +1

Query: 262  PSYLHVSGGVLETTVEGFRFFYNVST*NSSECCAGELWRLVE 387
            P +  V   VL T     R FYN    N  E C G  W+ ++
Sbjct: 3694 PLFKSVRNKVLLTVKNSKRAFYNNKVKNLKETCVGRWWKEIK 3735


>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 1414

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +1

Query: 262  PSYLHVSGGVLETTVEGFRFFYNVST*NSSECCAGELWRLVE 387
            P +  V   VL T     R FYN    N  E C G  W+ ++
Sbjct: 998  PLFKSVRNKVLLTVKNSKRAFYNNKVKNLKETCVGRWWKEIK 1039


>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +1

Query: 262 PSYLHVSGGVLETTVEGFRFFYNVST*NSSECCAGELWRLVE 387
           P +  V   VL T     R FYN    N  E C G  W+ ++
Sbjct: 504 PLFKSVRNKVLLTVKNSKRAFYNNKLKNLKETCVGRWWKEIK 545


>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
          Length = 965

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 369 TMASSGARTAGATNIHFIPRSSYIQVRWNLQKQLRFRTHISRERK 503
           T+ +   R AG+    F+P   Y + RW   ++L+ R    R R+
Sbjct: 735 TLLTMKTRPAGSPPGQFLPVDLYARRRWRQTRELKHRAFWRRRRQ 779


>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 830

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +2

Query: 311 DLGFFTMFPLKIVLSVVLANYGV*WSPHGGRHQHPFYSKKQLHSGKVE-PSKAIEISNS- 484
           D  +F   PLK  L+  L + G      GG+ +     K+ +HS K+E  SK +E   S 
Sbjct: 565 DPPYFGAVPLKSKLTQSLESIGREEMMKGGKSKQKEKEKRAVHSAKLEYDSKKVEEKGSG 624

Query: 485 YF*GTKMK 508
               TKMK
Sbjct: 625 KSQATKMK 632


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,355,560
Number of Sequences: 59808
Number of extensions: 342081
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)