Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0969.Seq
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49125-4|CAA88936.1|  644|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    27   7.2  
AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z49125-4|CAA88936.1|  644|Caenorhabditis elegans Hypothetical
           protein C47G2.4 protein.
          Length = 644

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 233 YNKHINERTCVPIVCYPLWYQQYWRLVVRPLQVQTTKMNFSEIY 102
           YN  ++  TCVPI     WY +      R L + T  M F  ++
Sbjct: 339 YNLELSRNTCVPIGVRRFWYTRLQTPFCRILGIVTVFMTFFVLF 382


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
            F54D1.5 protein.
          Length = 1406

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 195  CLLSSVVSTVLEISRQTLTSPNYKNEFF---RNIFY 97
            C+L  V      ++RQ LT PN K+  +   RNIFY
Sbjct: 1039 CVLLLVPLMAFGVNRQALTEPNVKDWHWLLVRNIFY 1074


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 195 CLLSSVVSTVLEISRQTLTSPNYKNEFF---RNIFY 97
           C+L  V      ++RQ LT PN K+  +   RNIFY
Sbjct: 755 CVLLLVPLMAFGVNRQALTEPNVKDWHWLLVRNIFY 790


>AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical
           protein T22B11.4b protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 221 INERTCVPIVCYPLWYQQYWR 159
           +NE + V +   P W + YWR
Sbjct: 131 VNENSSVVVTIEPFWLEPYWR 151


>AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical
           protein T22B11.4a protein.
          Length = 553

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 221 INERTCVPIVCYPLWYQQYWR 159
           +NE + V +   P W + YWR
Sbjct: 131 VNENSSVVVTIEPFWLEPYWR 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,181,473
Number of Sequences: 27780
Number of extensions: 274057
Number of successful extensions: 535
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)