Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0969.Seq
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS...    29   2.2  
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS...    29   2.2  
At2g22340.1 68415.m02651 hypothetical protein                          29   2.9  
At1g19100.1 68414.m02376 ATP-binding region, ATPase-like domain-...    29   2.9  
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f...    28   3.8  
At1g65760.1 68414.m07463 F-box family protein contains F-box dom...    27   8.8  

>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 357

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 425 WNKMDVGGARRAGSTRRHSSPAQHSE 348
           W K D GGA R+G +RR SS  + S+
Sbjct: 71  WTKNDRGGAGRSGGSRRSSSGLRPSK 96


>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 356

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 425 WNKMDVGGARRAGSTRRHSSPAQHSE 348
           W K D GGA R+G +RR SS  + S+
Sbjct: 71  WTKNDRGGAGRSGGSRRSSSGLRPSK 96


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 459 EGSTLPECNCFLE*NGCWWRP 397
           E S LPE +CF++ N  W++P
Sbjct: 191 EASLLPEGDCFIQLNCLWYKP 211


>At1g19100.1 68414.m02376 ATP-binding region, ATPase-like
           domain-containing protein-related low similarity to
           microrchidia [Homo sapiens] GI:5410257; contains
           non-consensus splice site (GC) at intron 8
          Length = 663

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 219 QRKDLRANCLLSSVVSTVLEISRQTLTS--PNYKNEFFR 109
           + K LRA CL   V S  LE+    L S   NYK+E+ R
Sbjct: 604 ENKKLRAKCLDRKVRSQNLEVKAMNLRSELENYKSEYER 642


>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc finger
            (C3HC4-type RING finger) family protein (BRCA1) contains
            Pfam profiles PF00533: BRCA1 C Terminus (BRCT) domain,
            PF00097: Zinc finger, C3HC4 type (RING finger), PF01535:
            PPR repeat; identical to cDNA BRCA1 GI:28372473
          Length = 1276

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -1

Query: 475  NLNCF*RFHLT*M*LLLGIKWMLVAPAVRAPLDAIVRQHNTQNYFKWKHCKKT*IPPL 302
            N +C   FH+T   L+   +W  V   +  PLDA ++    +   K + CK+T   PL
Sbjct: 983  NKSCKNSFHVTCAKLIPECRWDNVKFVMLCPLDASIKLPCEEANSKDRKCKRTPKEPL 1040


>At1g65760.1 68414.m07463 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 362

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 386 SPHGGRHQHPFYSKKQLHSGKVEPSKAIEISNSY 487
           S  G    +PF S+ ++H   ++PS+ +   +SY
Sbjct: 40  STSGVNRNNPFPSRPRIHFDPIDPSETLSSDDSY 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,290,419
Number of Sequences: 28952
Number of extensions: 249918
Number of successful extensions: 494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)