Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0968.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    24   1.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.8  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   3.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.1  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 380 FIDADNVERVKSHADMELILSRSSLRGTYCSRYVLP 487
           ++  +NVE+  +H   ++I  R + +     RYV P
Sbjct: 758 YLQIENVEQTLNHEIKKVIPGRITQKSCSTKRYVTP 793


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 112 LMTAALCSTARNMDLSTLGGRFRLRS 35
           L T    S  ++ D+S+   RFRLRS
Sbjct: 40  LKTTQSVSVTKDQDVSSSVNRFRLRS 65


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock
          protein 90 protein.
          Length = 721

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 82 RNMDLSTLGGRFRLRSSMYNLINTFYS 2
          +N D+ T   +  +   M  +INTFYS
Sbjct: 6  QNGDVETFAFQAEIAQLMSLIINTFYS 32


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 113  ANDGCIVQYRPEHGPLDAW 57
            A +G I  Y+  +GP D W
Sbjct: 1128 AANGVIKGYKVIYGPSDTW 1146


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,309
Number of Sequences: 336
Number of extensions: 2847
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)