Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0968.Seq
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 118 8e-28
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 117 1e-27
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.45
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 29 0.45
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 29 0.45
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.45
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom... 27 1.4
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 26 3.2
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 4.2
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 25 5.6
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 5.6
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 118 bits (283), Expect = 8e-28
Identities = 56/91 (61%), Positives = 64/91 (70%)
Frame = -2
Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368
FPLC+H Q++SEAL A + GKD FH+R+R HPFHV+RINKMLSC
Sbjct: 46 FPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSC 105
Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275
AGADRLQTGMR AFGKP G VARV IGQ +M
Sbjct: 106 AGADRLQTGMRHAFGKPNGLVARVNIGQVLM 136
Score = 74.5 bits (175), Expect = 9e-15
Identities = 31/62 (50%), Positives = 44/62 (70%)
Frame = -1
Query: 251 KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 72
+A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G + DGC ++ + G
Sbjct: 145 RATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRG 204
Query: 71 PL 66
L
Sbjct: 205 SL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 117 bits (282), Expect = 1e-27
Identities = 56/91 (61%), Positives = 64/91 (70%)
Frame = -2
Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368
FPLC+H Q++SEAL A + GKD FH+R+R HPFHV+RINKMLSC
Sbjct: 46 FPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSC 105
Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275
AGADRLQTGMR AFGKP G VARV IGQ +M
Sbjct: 106 AGADRLQTGMRHAFGKPNGLVARVNIGQILM 136
Score = 74.5 bits (175), Expect = 9e-15
Identities = 31/62 (50%), Positives = 44/62 (70%)
Frame = -1
Query: 251 KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 72
+A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G + DGC ++ + G
Sbjct: 145 RATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRG 204
Query: 71 PL 66
L
Sbjct: 205 SL 206
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.45
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 111 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 245
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.45
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 111 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 245
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 29.1 bits (62), Expect = 0.45
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 111 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 245
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.45
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 111 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 245
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 470 CNKYLVKNCGKGSVPYPHETSPFPRY 393
C Y ++ GKGSV Y H TS Y
Sbjct: 48 CPYYFIEKSGKGSVVYFHPTSDLCGY 73
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 231 SLDDLCLPLSLERTDMMGCPMRTRATVP 314
S +LC + L+RT++ C TR+T+P
Sbjct: 499 STPNLCDQVWLDRTNLFPCNRSTRSTLP 526
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -2
Query: 229 CAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 113
C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 31 CVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 308 STLRLAKRTTHPSLEPISSS 367
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 348 RLGCVVRLASLRVL*HVFALDSPSCPCALVTVEGTGHRGSA 226
R+GC + + L ++ +V L CP AL+ + G A
Sbjct: 252 RIGCEIEASVLFIMGNVLFLCEMECPGALIRTRNSIRNGIA 292
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 439 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 335
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,045
Number of Sequences: 5004
Number of extensions: 47211
Number of successful extensions: 138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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