BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0968.Seq (548 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 119 2e-27 03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 115 2e-26 05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 114 5e-26 05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 0.80 09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 28 4.3 07_03_0604 + 19903654-19904598 28 4.3 10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369 28 5.6 02_01_0254 - 1669461-1669590,1669833-1672318 28 5.6 01_01_0545 - 4002659-4003307,4003415-4003887 28 5.6 11_01_0053 - 401578-401824,401996-402079,402201-402388,402713-40... 27 9.9 09_03_0192 + 13344558-13344942,13345038-13345591 27 9.9 08_01_1053 - 10716970-10717474,10718259-10718323 27 9.9 07_03_0786 + 21510477-21511451,21512272-21512499 27 9.9 05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297... 27 9.9 >11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496, 6245741-6245821 Length = 224 Score = 119 bits (286), Expect = 2e-27 Identities = 58/91 (63%), Positives = 66/91 (72%) Frame = -2 Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368 FP CVH +SSEAL A + AGKD FH+R+R+HPFHV+RINKMLSC Sbjct: 46 FPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSC 105 Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275 AGADRLQTGMRGAFGKPQGT ARV IGQ ++ Sbjct: 106 AGADRLQTGMRGAFGKPQGTCARVDIGQVLL 136 Score = 79.8 bits (188), Expect = 1e-15 Identities = 36/57 (63%), Positives = 43/57 (75%) Frame = -1 Query: 236 EALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 66 EALRRAKFKFPGRQKI S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L Sbjct: 150 EALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206 >03_02_0897 - 12239375-12239458,12240035-12240116,12240213-12240714, 12241150-12241303,12241458-12241629,12242237-12242443, 12242926-12243323 Length = 532 Score = 115 bits (277), Expect = 2e-26 Identities = 57/91 (62%), Positives = 65/91 (71%) Frame = -2 Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368 FPLCVH +SSEAL A + AGKD FH+R+ HP+HV+RINKMLSC Sbjct: 353 FPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSC 412 Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275 AGADRLQTGMRGAFGKP GT ARVRIGQ ++ Sbjct: 413 AGADRLQTGMRGAFGKPTGTCARVRIGQVLL 443 Score = 76.6 bits (180), Expect = 1e-14 Identities = 33/59 (55%), Positives = 42/59 (71%) Frame = -1 Query: 248 AQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 72 A EALRRAKFKFPGRQ++ S KWGFT+++RDE+ KL+ EGR+ DG + HG Sbjct: 453 AHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511 >05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522, 4086671-4087357,4087555-4087813,4088435-4088558, 4089474-4089564 Length = 580 Score = 114 bits (274), Expect = 5e-26 Identities = 56/91 (61%), Positives = 66/91 (72%) Frame = -2 Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368 F CVH ++SEAL A ++AGKD FH+R+R+HPFHV+RINKMLSC Sbjct: 42 FSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSC 101 Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275 AGADRLQTGMRGAFGKPQGT ARV IGQ ++ Sbjct: 102 AGADRLQTGMRGAFGKPQGTCARVDIGQVLL 132 Score = 81.0 bits (191), Expect = 6e-16 Identities = 59/147 (40%), Positives = 74/147 (50%), Gaps = 5/147 (3%) Frame = -1 Query: 527 WCPTNMTAELRGFEAXRICCNKYLVKNCGKGSVPYPHETSPFPRYPHQ*NVIMRWS**AP 348 W N+T+E EA RI CNKY+ K+ GK + PF H + S Sbjct: 51 WEKENVTSE--ALEAARIACNKYMTKSAGKDAFHLRVRVHPF----HVLRINKMLSCAGA 104 Query: 347 DWDAWCVWQASGYCS-TCSHWTAHHVRAL**QWK----AQVIEALRRAKFKFPGRQKIYV 183 D + A G TC+ V L + K EALRRAKFKFPGRQKI Sbjct: 105 DRLQTGMRGAFGKPQGTCARVDIGQV-LLSVRCKPNNAVHASEALRRAKFKFPGRQKIIE 163 Query: 182 SKKWGFTKYERDEFEKLREEGRLANDG 102 S+KWGFTK+ RDE+ +L+ EGR+ DG Sbjct: 164 SRKWGFTKFSRDEYVRLKSEGRIMPDG 190 >05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613, 2879715-2879973,2880060-2880346,2880423-2880758, 2880862-2881003,2881077-2881297,2881379-2881540, 2881617-2881775,2881860-2882159,2882834-2883097, 2883133-2883243,2883902-2883988 Length = 1871 Score = 30.7 bits (66), Expect = 0.80 Identities = 10/31 (32%), Positives = 21/31 (67%) Frame = +3 Query: 279 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 371 + CP+ + + VP LP++P P++S ++P + Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655 >09_03_0039 + 11799277-11799486,11799565-11799710,11800758-11800860, 11800996-11801182,11801299-11801392,11801530-11801683, 11801963-11802067,11802151-11802267,11802688-11802801, 11803171-11803260,11803875-11804057,11809196-11809550, 11809574-11809643,11809993-11810167,11810251-11810351, 11810390-11810516,11810639-11810716,11811926-11812270 Length = 917 Score = 28.3 bits (60), Expect = 4.3 Identities = 10/42 (23%), Positives = 26/42 (61%) Frame = +3 Query: 21 RLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKL 146 +++ +D + +LPP ++ + +V+HN + + + + LLK+ Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725 >07_03_0604 + 19903654-19904598 Length = 314 Score = 28.3 bits (60), Expect = 4.3 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 7/73 (9%) Frame = +2 Query: 80 PGGTAQCSRH*RGGPLHAASQTHHVHTL*NPTSLI----RRSFDVRGT*TWHGAEPR*PV 247 PGG + R G P+H A + HH + RR RG G PR P Sbjct: 80 PGGRRRRPRRVEGAPVHRARRLHHRRVRRRRVHVAVRSSRRRHGRRGE-EGQGRRPRVPA 138 Query: 248 PSTV---TRAHGH 277 + + RAHGH Sbjct: 139 GAQLRRRRRAHGH 151 >10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369 Length = 269 Score = 27.9 bits (59), Expect = 5.6 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = -1 Query: 251 KAQVIEA-LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEH 75 KA +I+ RR + K+PG QK+ + G K +A+DG ++Q + Sbjct: 151 KAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKF-----VADDGDVIQMDLQE 205 Query: 74 GPLDAWRKVQ 45 L AWR ++ Sbjct: 206 AGLPAWRPMK 215 >02_01_0254 - 1669461-1669590,1669833-1672318 Length = 871 Score = 27.9 bits (59), Expect = 5.6 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +3 Query: 12 VLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLK 143 V +RL++ S PPS + F A + AA +AAL LL+ Sbjct: 24 VALRLFLHLTSAASPPSPHSTSFLARILAAAAAHDAALLPSLLR 67 >01_01_0545 - 4002659-4003307,4003415-4003887 Length = 373 Score = 27.9 bits (59), Expect = 5.6 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +1 Query: 397 RGKGEVSCGYGTDPFPQFFTRYL 465 RG GE CGYG+ P FF++ + Sbjct: 106 RGPGE-PCGYGSPPISSFFSKLM 127 >11_01_0053 - 401578-401824,401996-402079,402201-402388,402713-402779, 402905-403105,403712-403789,404358-404374 Length = 293 Score = 27.1 bits (57), Expect = 9.9 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -1 Query: 197 QKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPE 78 +KIY S WGFT E++ + +E + I + +PE Sbjct: 2 EKIYRSHLWGFTANEKEAYSGENDERQQILQLIIEEKQPE 41 >09_03_0192 + 13344558-13344942,13345038-13345591 Length = 312 Score = 27.1 bits (57), Expect = 9.9 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Frame = -1 Query: 227 RRAKFKFPGRQKIY----VSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDA 60 R A+ ++P +Y +++K F +D LR+ A D + Y+ GPLDA Sbjct: 92 RLARSEYPKHHYVYPMAGLNEKVDFLCKAKDLMHHLRKSK--ATDWALGPYKSVFGPLDA 149 Query: 59 WRKVQAEILNV 27 + EIL+V Sbjct: 150 QTQDGMEILDV 160 >08_01_1053 - 10716970-10717474,10718259-10718323 Length = 189 Score = 27.1 bits (57), Expect = 9.9 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Frame = -2 Query: 319 PQGTVARVR--IGQPIMXXXXXXXXXXXXXRLCAVPSSSSPDVKRSTYQRSGVSQS 158 P GT+ ++ +GQPI LC++ S + R YQ G++ S Sbjct: 94 PMGTIRQLAEFLGQPISDAEEETGVVAEIVELCSLESMKKQKINREGYQGVGITFS 149 >07_03_0786 + 21510477-21511451,21512272-21512499 Length = 400 Score = 27.1 bits (57), Expect = 9.9 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +2 Query: 197 DVRGT*TWHGAEPR*PVPSTVTRAHGHDGLSNANTCYS 310 ++RG EPR +P+ + RA+GH CY+ Sbjct: 314 ELRGPKNVRPTEPRGCLPAVLRRANGHQSRRGRARCYA 351 >05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253, 2972300-2972817 Length = 406 Score = 27.1 bits (57), Expect = 9.9 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -1 Query: 380 NVIMRWS**APDWDAWCVWQASGYCSTCSHWT 285 NV+ RW P AWC + S + CS W+ Sbjct: 342 NVLGRWGH-GPVPGAWCSGRKSWFSDPCSQWS 372 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,227,537 Number of Sequences: 37544 Number of extensions: 353729 Number of successful extensions: 906 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 874 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 902 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1233951264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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