Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0968.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 119 2e-27
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 115 2e-26
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 114 5e-26
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 0.80
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 28 4.3
07_03_0604 + 19903654-19904598 28 4.3
10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369 28 5.6
02_01_0254 - 1669461-1669590,1669833-1672318 28 5.6
01_01_0545 - 4002659-4003307,4003415-4003887 28 5.6
11_01_0053 - 401578-401824,401996-402079,402201-402388,402713-40... 27 9.9
09_03_0192 + 13344558-13344942,13345038-13345591 27 9.9
08_01_1053 - 10716970-10717474,10718259-10718323 27 9.9
07_03_0786 + 21510477-21511451,21512272-21512499 27 9.9
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297... 27 9.9
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 119 bits (286), Expect = 2e-27
Identities = 58/91 (63%), Positives = 66/91 (72%)
Frame = -2
Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368
FP CVH +SSEAL A + AGKD FH+R+R+HPFHV+RINKMLSC
Sbjct: 46 FPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSC 105
Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275
AGADRLQTGMRGAFGKPQGT ARV IGQ ++
Sbjct: 106 AGADRLQTGMRGAFGKPQGTCARVDIGQVLL 136
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/57 (63%), Positives = 43/57 (75%)
Frame = -1
Query: 236 EALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 66
EALRRAKFKFPGRQKI S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 150 EALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 115 bits (277), Expect = 2e-26
Identities = 57/91 (62%), Positives = 65/91 (71%)
Frame = -2
Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368
FPLCVH +SSEAL A + AGKD FH+R+ HP+HV+RINKMLSC
Sbjct: 353 FPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSC 412
Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275
AGADRLQTGMRGAFGKP GT ARVRIGQ ++
Sbjct: 413 AGADRLQTGMRGAFGKPTGTCARVRIGQVLL 443
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/59 (55%), Positives = 42/59 (71%)
Frame = -1
Query: 248 AQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 72
A EALRRAKFKFPGRQ++ S KWGFT+++RDE+ KL+ EGR+ DG + HG
Sbjct: 453 AHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 114 bits (274), Expect = 5e-26
Identities = 56/91 (61%), Positives = 66/91 (72%)
Frame = -2
Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368
F CVH ++SEAL A ++AGKD FH+R+R+HPFHV+RINKMLSC
Sbjct: 42 FSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSC 101
Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275
AGADRLQTGMRGAFGKPQGT ARV IGQ ++
Sbjct: 102 AGADRLQTGMRGAFGKPQGTCARVDIGQVLL 132
Score = 81.0 bits (191), Expect = 6e-16
Identities = 59/147 (40%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Frame = -1
Query: 527 WCPTNMTAELRGFEAXRICCNKYLVKNCGKGSVPYPHETSPFPRYPHQ*NVIMRWS**AP 348
W N+T+E EA RI CNKY+ K+ GK + PF H + S
Sbjct: 51 WEKENVTSE--ALEAARIACNKYMTKSAGKDAFHLRVRVHPF----HVLRINKMLSCAGA 104
Query: 347 DWDAWCVWQASGYCS-TCSHWTAHHVRAL**QWK----AQVIEALRRAKFKFPGRQKIYV 183
D + A G TC+ V L + K EALRRAKFKFPGRQKI
Sbjct: 105 DRLQTGMRGAFGKPQGTCARVDIGQV-LLSVRCKPNNAVHASEALRRAKFKFPGRQKIIE 163
Query: 182 SKKWGFTKYERDEFEKLREEGRLANDG 102
S+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 164 SRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 0.80
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 279 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 371
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = +3
Query: 21 RLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKL 146
+++ +D + +LPP ++ + +V+HN + + + + LLK+
Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725
>07_03_0604 + 19903654-19904598
Length = 314
Score = 28.3 bits (60), Expect = 4.3
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Frame = +2
Query: 80 PGGTAQCSRH*RGGPLHAASQTHHVHTL*NPTSLI----RRSFDVRGT*TWHGAEPR*PV 247
PGG + R G P+H A + HH + RR RG G PR P
Sbjct: 80 PGGRRRRPRRVEGAPVHRARRLHHRRVRRRRVHVAVRSSRRRHGRRGE-EGQGRRPRVPA 138
Query: 248 PSTV---TRAHGH 277
+ + RAHGH
Sbjct: 139 GAQLRRRRRAHGH 151
>10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369
Length = 269
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -1
Query: 251 KAQVIEA-LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEH 75
KA +I+ RR + K+PG QK+ + G K +A+DG ++Q +
Sbjct: 151 KAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKF-----VADDGDVIQMDLQE 205
Query: 74 GPLDAWRKVQ 45
L AWR ++
Sbjct: 206 AGLPAWRPMK 215
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 12 VLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLK 143
V +RL++ S PPS + F A + AA +AAL LL+
Sbjct: 24 VALRLFLHLTSAASPPSPHSTSFLARILAAAAAHDAALLPSLLR 67
>01_01_0545 - 4002659-4003307,4003415-4003887
Length = 373
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 397 RGKGEVSCGYGTDPFPQFFTRYL 465
RG GE CGYG+ P FF++ +
Sbjct: 106 RGPGE-PCGYGSPPISSFFSKLM 127
>11_01_0053 -
401578-401824,401996-402079,402201-402388,402713-402779,
402905-403105,403712-403789,404358-404374
Length = 293
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 197 QKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPE 78
+KIY S WGFT E++ + +E + I + +PE
Sbjct: 2 EKIYRSHLWGFTANEKEAYSGENDERQQILQLIIEEKQPE 41
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 27.1 bits (57), Expect = 9.9
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -1
Query: 227 RRAKFKFPGRQKIY----VSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDA 60
R A+ ++P +Y +++K F +D LR+ A D + Y+ GPLDA
Sbjct: 92 RLARSEYPKHHYVYPMAGLNEKVDFLCKAKDLMHHLRKSK--ATDWALGPYKSVFGPLDA 149
Query: 59 WRKVQAEILNV 27
+ EIL+V
Sbjct: 150 QTQDGMEILDV 160
>08_01_1053 - 10716970-10717474,10718259-10718323
Length = 189
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -2
Query: 319 PQGTVARVR--IGQPIMXXXXXXXXXXXXXRLCAVPSSSSPDVKRSTYQRSGVSQS 158
P GT+ ++ +GQPI LC++ S + R YQ G++ S
Sbjct: 94 PMGTIRQLAEFLGQPISDAEEETGVVAEIVELCSLESMKKQKINREGYQGVGITFS 149
>07_03_0786 + 21510477-21511451,21512272-21512499
Length = 400
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 197 DVRGT*TWHGAEPR*PVPSTVTRAHGHDGLSNANTCYS 310
++RG EPR +P+ + RA+GH CY+
Sbjct: 314 ELRGPKNVRPTEPRGCLPAVLRRANGHQSRRGRARCYA 351
>05_01_0378 +
2970528-2971008,2971961-2972036,2972108-2972253,
2972300-2972817
Length = 406
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 380 NVIMRWS**APDWDAWCVWQASGYCSTCSHWT 285
NV+ RW P AWC + S + CS W+
Sbjct: 342 NVLGRWGH-GPVPGAWCSGRKSWFSDPCSQWS 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,227,537
Number of Sequences: 37544
Number of extensions: 353729
Number of successful extensions: 906
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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