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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0968.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624...   119   2e-27
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407...   115   2e-26
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...   114   5e-26
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    31   0.80 
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008...    28   4.3  
07_03_0604 + 19903654-19904598                                         28   4.3  
10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369     28   5.6  
02_01_0254 - 1669461-1669590,1669833-1672318                           28   5.6  
01_01_0545 - 4002659-4003307,4003415-4003887                           28   5.6  
11_01_0053 - 401578-401824,401996-402079,402201-402388,402713-40...    27   9.9  
09_03_0192 + 13344558-13344942,13345038-13345591                       27   9.9  
08_01_1053 - 10716970-10717474,10718259-10718323                       27   9.9  
07_03_0786 + 21510477-21511451,21512272-21512499                       27   9.9  
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297...    27   9.9  

>11_01_0740 +
           6243517-6243526,6244822-6245323,6245415-6245496,
           6245741-6245821
          Length = 224

 Score =  119 bits (286), Expect = 2e-27
 Identities = 58/91 (63%), Positives = 66/91 (72%)
 Frame = -2

Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368
           FP CVH        +SSEAL     A      + AGKD FH+R+R+HPFHV+RINKMLSC
Sbjct: 46  FPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSC 105

Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275
           AGADRLQTGMRGAFGKPQGT ARV IGQ ++
Sbjct: 106 AGADRLQTGMRGAFGKPQGTCARVDIGQVLL 136



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 36/57 (63%), Positives = 43/57 (75%)
 Frame = -1

Query: 236 EALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 66
           EALRRAKFKFPGRQKI  S+KWGFTK+ R+E+ KL+ EGR+ +DG   Q    HG L
Sbjct: 150 EALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206


>03_02_0897 -
           12239375-12239458,12240035-12240116,12240213-12240714,
           12241150-12241303,12241458-12241629,12242237-12242443,
           12242926-12243323
          Length = 532

 Score =  115 bits (277), Expect = 2e-26
 Identities = 57/91 (62%), Positives = 65/91 (71%)
 Frame = -2

Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368
           FPLCVH        +SSEAL     A      + AGKD FH+R+  HP+HV+RINKMLSC
Sbjct: 353 FPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSC 412

Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275
           AGADRLQTGMRGAFGKP GT ARVRIGQ ++
Sbjct: 413 AGADRLQTGMRGAFGKPTGTCARVRIGQVLL 443



 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 33/59 (55%), Positives = 42/59 (71%)
 Frame = -1

Query: 248 AQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 72
           A   EALRRAKFKFPGRQ++  S KWGFT+++RDE+ KL+ EGR+  DG   +    HG
Sbjct: 453 AHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score =  114 bits (274), Expect = 5e-26
 Identities = 56/91 (61%), Positives = 66/91 (72%)
 Frame = -2

Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368
           F  CVH        ++SEAL     A      ++AGKD FH+R+R+HPFHV+RINKMLSC
Sbjct: 42  FSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSC 101

Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275
           AGADRLQTGMRGAFGKPQGT ARV IGQ ++
Sbjct: 102 AGADRLQTGMRGAFGKPQGTCARVDIGQVLL 132



 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 59/147 (40%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
 Frame = -1

Query: 527 WCPTNMTAELRGFEAXRICCNKYLVKNCGKGSVPYPHETSPFPRYPHQ*NVIMRWS**AP 348
           W   N+T+E    EA RI CNKY+ K+ GK +        PF    H   +    S    
Sbjct: 51  WEKENVTSE--ALEAARIACNKYMTKSAGKDAFHLRVRVHPF----HVLRINKMLSCAGA 104

Query: 347 DWDAWCVWQASGYCS-TCSHWTAHHVRAL**QWK----AQVIEALRRAKFKFPGRQKIYV 183
           D     +  A G    TC+      V  L  + K        EALRRAKFKFPGRQKI  
Sbjct: 105 DRLQTGMRGAFGKPQGTCARVDIGQV-LLSVRCKPNNAVHASEALRRAKFKFPGRQKIIE 163

Query: 182 SKKWGFTKYERDEFEKLREEGRLANDG 102
           S+KWGFTK+ RDE+ +L+ EGR+  DG
Sbjct: 164 SRKWGFTKFSRDEYVRLKSEGRIMPDG 190


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 279  MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 371
            + CP+ + + VP  LP++P  P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655


>09_03_0039 +
           11799277-11799486,11799565-11799710,11800758-11800860,
           11800996-11801182,11801299-11801392,11801530-11801683,
           11801963-11802067,11802151-11802267,11802688-11802801,
           11803171-11803260,11803875-11804057,11809196-11809550,
           11809574-11809643,11809993-11810167,11810251-11810351,
           11810390-11810516,11810639-11810716,11811926-11812270
          Length = 917

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/42 (23%), Positives = 26/42 (61%)
 Frame = +3

Query: 21  RLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKL 146
           +++ +D + +LPP   ++ + +V+HN +  + +  +  LLK+
Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725


>07_03_0604 + 19903654-19904598
          Length = 314

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
 Frame = +2

Query: 80  PGGTAQCSRH*RGGPLHAASQTHHVHTL*NPTSLI----RRSFDVRGT*TWHGAEPR*PV 247
           PGG  +  R   G P+H A + HH         +     RR    RG     G  PR P 
Sbjct: 80  PGGRRRRPRRVEGAPVHRARRLHHRRVRRRRVHVAVRSSRRRHGRRGE-EGQGRRPRVPA 138

Query: 248 PSTV---TRAHGH 277
            + +    RAHGH
Sbjct: 139 GAQLRRRRRAHGH 151


>10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369
          Length = 269

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -1

Query: 251 KAQVIEA-LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEH 75
           KA +I+   RR + K+PG QK+    + G          K      +A+DG ++Q   + 
Sbjct: 151 KAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKF-----VADDGDVIQMDLQE 205

Query: 74  GPLDAWRKVQ 45
             L AWR ++
Sbjct: 206 AGLPAWRPMK 215


>02_01_0254 - 1669461-1669590,1669833-1672318
          Length = 871

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 12  VLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLK 143
           V +RL++   S   PPS   + F A +  AA   +AAL   LL+
Sbjct: 24  VALRLFLHLTSAASPPSPHSTSFLARILAAAAAHDAALLPSLLR 67


>01_01_0545 - 4002659-4003307,4003415-4003887
          Length = 373

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 397 RGKGEVSCGYGTDPFPQFFTRYL 465
           RG GE  CGYG+ P   FF++ +
Sbjct: 106 RGPGE-PCGYGSPPISSFFSKLM 127


>11_01_0053 -
           401578-401824,401996-402079,402201-402388,402713-402779,
           402905-403105,403712-403789,404358-404374
          Length = 293

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 197 QKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPE 78
           +KIY S  WGFT  E++ +    +E +      I + +PE
Sbjct: 2   EKIYRSHLWGFTANEKEAYSGENDERQQILQLIIEEKQPE 41


>09_03_0192 + 13344558-13344942,13345038-13345591
          Length = 312

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = -1

Query: 227 RRAKFKFPGRQKIY----VSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDA 60
           R A+ ++P    +Y    +++K  F    +D    LR+    A D  +  Y+   GPLDA
Sbjct: 92  RLARSEYPKHHYVYPMAGLNEKVDFLCKAKDLMHHLRKSK--ATDWALGPYKSVFGPLDA 149

Query: 59  WRKVQAEILNV 27
             +   EIL+V
Sbjct: 150 QTQDGMEILDV 160


>08_01_1053 - 10716970-10717474,10718259-10718323
          Length = 189

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -2

Query: 319 PQGTVARVR--IGQPIMXXXXXXXXXXXXXRLCAVPSSSSPDVKRSTYQRSGVSQS 158
           P GT+ ++   +GQPI               LC++ S     + R  YQ  G++ S
Sbjct: 94  PMGTIRQLAEFLGQPISDAEEETGVVAEIVELCSLESMKKQKINREGYQGVGITFS 149


>07_03_0786 + 21510477-21511451,21512272-21512499
          Length = 400

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 197 DVRGT*TWHGAEPR*PVPSTVTRAHGHDGLSNANTCYS 310
           ++RG       EPR  +P+ + RA+GH        CY+
Sbjct: 314 ELRGPKNVRPTEPRGCLPAVLRRANGHQSRRGRARCYA 351


>05_01_0378 +
           2970528-2971008,2971961-2972036,2972108-2972253,
           2972300-2972817
          Length = 406

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 380 NVIMRWS**APDWDAWCVWQASGYCSTCSHWT 285
           NV+ RW    P   AWC  + S +   CS W+
Sbjct: 342 NVLGRWGH-GPVPGAWCSGRKSWFSDPCSQWS 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,227,537
Number of Sequences: 37544
Number of extensions: 353729
Number of successful extensions: 906
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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