Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0968.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         43   2e-04
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)          34   0.088
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              29   3.3  
SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10)           28   5.8  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              28   5.8  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)                 27   7.6  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = -2

Query: 340 MRGAFGKPQGTVARVRIGQPIM 275
           MRGAFGKPQGTVARV IGQ I+
Sbjct: 1   MRGAFGKPQGTVARVNIGQTII 22



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 18/20 (90%), Positives = 18/20 (90%)
 Frame = -1

Query: 251 KAQVIEALRRAKFKFPGRQK 192
           KA  IEALRRAKFKFPGRQK
Sbjct: 31  KAAAIEALRRAKFKFPGRQK 50


>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
          Length = 659

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +2

Query: 62  RREVHVPGGTAQCSRH*RGGPLHAASQTHHVHTL*NPTSLIRRSFDVRGT*TWHGAEPR* 241
           +R++HV G + +   H  GG L    Q H +    NP++    +       T   A    
Sbjct: 10  KRQLHVRGLSRKWVMH-PGGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAA---- 64

Query: 242 PVPSTVTR--AHGHDGLSNANTC 304
           P+P+  +R  A  +DGLSNAN C
Sbjct: 65  PIPTQTSRSVALAYDGLSNANVC 87


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +1

Query: 289 QCEHVLQYPEACQTHHASQSGAYQLQRMITFY*CG*RGKGEVSCGYG 429
           +C  V Q P AC   + S  GA +       Y C    K  V CG G
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKG 581


>SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10)
          Length = 315

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +3

Query: 3   E*NVLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILC 164
           E +V +RL++E + L++P  +   + R VLH  + +S+  L      LIT ++C
Sbjct: 97  ESDVSMRLFLEVI-LSVPFLISNDLHRLVLHQQSALSQKVLI-----LITTVVC 144


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 332 CVWQASGYCSTCSHWTAHHV 273
           C W  +G C  C HW   HV
Sbjct: 79  CYWIRTGCCHLCWHWRPLHV 98


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
 Frame = -3

Query: 429 SISA*DFTLSTLSASIK---CYHALELIGSRLGCVVRLASLRV---L*HVFALDSPSCPC 268
           S S  DFT+  L          HA++  G+R G   R+ ++ V   L H  + D  S   
Sbjct: 291 SSSLPDFTVPLLEMGFSRRHVLHAMQATGTRPGADTRMINVMVTWLLEHTVSDDGLSGQS 350

Query: 267 ALVTVEGTGHRGSAPCQVQVPRTSKDLRIKEVG 169
           A    E   H     CQV VP+ +K +R    G
Sbjct: 351 A----EQENHLTCDICQVTVPQFNKHMRTHHPG 379


>SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)
          Length = 434

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -1

Query: 185 VSKKWGFTKYE---RDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 57
           V K W  T +E   +     LR   R   D CI+ Y+ ++GPL  W
Sbjct: 390 VFKDWNCTYHELLIKANLSTLRN--RRLQDICILMYKVKNGPLPIW 433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,222,600
Number of Sequences: 59808
Number of extensions: 389751
Number of successful extensions: 1073
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)