BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0968.Seq (548 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 112 1e-25 Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical pr... 28 3.9 AF099913-8|ABB51194.1| 301|Caenorhabditis elegans Hypothetical ... 28 5.1 >Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical protein F10B5.1 protein. Length = 214 Score = 112 bits (270), Expect = 1e-25 Identities = 56/87 (64%), Positives = 60/87 (68%) Frame = -2 Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368 FP CVH LSSEAL A + GKD FH+R+R HPFHV RINKMLSC Sbjct: 46 FPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSC 105 Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIG 287 AGADRLQTGMRGA+GKPQG VARV IG Sbjct: 106 AGADRLQTGMRGAYGKPQGLVARVDIG 132 Score = 91.1 bits (216), Expect = 5e-19 Identities = 39/61 (63%), Positives = 49/61 (80%) Frame = -1 Query: 239 IEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDA 60 IEA RRAKFKFPGRQ I S+KWGFTK++R+++E++R EGRL +DG VQ + EHGPL Sbjct: 149 IEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTK 208 Query: 59 W 57 W Sbjct: 209 W 209 >Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical protein C09G5.2 protein. Length = 476 Score = 28.3 bits (60), Expect = 3.9 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +3 Query: 318 GLPNAPRIPVWSLSAPA 368 G PN+P +P+W LS P+ Sbjct: 232 GFPNSPLLPIWLLSYPS 248 >AF099913-8|ABB51194.1| 301|Caenorhabditis elegans Hypothetical protein C29F9.4 protein. Length = 301 Score = 27.9 bits (59), Expect = 5.1 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -1 Query: 167 FTKYERDEFEKLREEGRLANDGCIVQYR 84 F K +RDEFE++R + LA + I Y+ Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,264,628 Number of Sequences: 27780 Number of extensions: 282479 Number of successful extensions: 697 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 682 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 696 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1113119490 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -