Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0968.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   112   1e-25
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   5.1  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  112 bits (270), Expect = 1e-25
 Identities = 56/87 (64%), Positives = 60/87 (68%)
 Frame = -2

Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368
           FP CVH        LSSEAL      A     +  GKD FH+R+R HPFHV RINKMLSC
Sbjct: 46  FPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSC 105

Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIG 287
           AGADRLQTGMRGA+GKPQG VARV IG
Sbjct: 106 AGADRLQTGMRGAYGKPQGLVARVDIG 132



 Score = 91.1 bits (216), Expect = 5e-19
 Identities = 39/61 (63%), Positives = 49/61 (80%)
 Frame = -1

Query: 239 IEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDA 60
           IEA RRAKFKFPGRQ I  S+KWGFTK++R+++E++R EGRL +DG  VQ + EHGPL  
Sbjct: 149 IEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTK 208

Query: 59  W 57
           W
Sbjct: 209 W 209


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 318 GLPNAPRIPVWSLSAPA 368
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 167 FTKYERDEFEKLREEGRLANDGCIVQYR 84
           F K +RDEFE++R +  LA +  I  Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,264,628
Number of Sequences: 27780
Number of extensions: 282479
Number of successful extensions: 697
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)