Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0968.Seq
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 114 4e-26
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 114 4e-26
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 113 6e-26
At4g13965.1 68417.m02160 F-box family protein contains F-box dom... 27 6.2
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 27 8.3
At5g13030.1 68418.m01494 expressed protein contains Pfam profile... 27 8.3
At2g30040.1 68415.m03653 protein kinase family protein contains ... 27 8.3
At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identic... 27 8.3
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 114 bits (274), Expect = 4e-26
Identities = 56/91 (61%), Positives = 65/91 (71%)
Frame = -2
Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368
FP CVH +SSEAL A ++AGKD FH+R+R+HPFHV+RINKMLSC
Sbjct: 46 FPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSC 105
Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275
AGADRLQTGMRGAFGK GT ARV IGQ ++
Sbjct: 106 AGADRLQTGMRGAFGKALGTCARVAIGQVLL 136
Score = 87.0 bits (206), Expect = 7e-18
Identities = 63/159 (39%), Positives = 79/159 (49%), Gaps = 5/159 (3%)
Frame = -1
Query: 527 WCPTNMTAELRGFEAXRICCNKYLVKNCGKGSVPYPHETSPFPRYPHQ*NVIMRWS**AP 348
W N+++E EA RI CNKY+VK+ GK + PF H + S
Sbjct: 55 WEKENVSSE--ALEAARIACNKYMVKSAGKDAFHLRIRVHPF----HVLRINKMLSCAGA 108
Query: 347 DWDAWCVWQASGYC-STCSHWTAHHVRAL**QWK----AQVIEALRRAKFKFPGRQKIYV 183
D + A G TC+ V L + K EALRRAKFKFPGRQKI V
Sbjct: 109 DRLQTGMRGAFGKALGTCARVAIGQV-LLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIV 167
Query: 182 SKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 66
S+KWGFTK+ R E+ KLR R+ DG ++ HGPL
Sbjct: 168 SRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 114 bits (274), Expect = 4e-26
Identities = 56/91 (61%), Positives = 65/91 (71%)
Frame = -2
Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368
FP CVH +SSEAL A ++AGKD FH+R+R+HPFHV+RINKMLSC
Sbjct: 46 FPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSC 105
Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275
AGADRLQTGMRGAFGK GT ARV IGQ ++
Sbjct: 106 AGADRLQTGMRGAFGKALGTCARVAIGQVLL 136
Score = 88.2 bits (209), Expect = 3e-18
Identities = 63/158 (39%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Frame = -1
Query: 527 WCPTNMTAELRGFEAXRICCNKYLVKNCGKGSVPYPHETSPFPRYPHQ*NVIMRWS**AP 348
W N+++E EA RI CNKY+VK+ GK + PF H + S
Sbjct: 55 WEKENVSSE--ALEAARIACNKYMVKSAGKDAFHLRIRVHPF----HVLRINKMLSCAGA 108
Query: 347 DWDAWCVWQASGYC-STCSHWTAHHVRAL**QWKAQ---VIEALRRAKFKFPGRQKIYVS 180
D + A G TC+ V A EALRRAKFKFPGRQKI VS
Sbjct: 109 DRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVS 168
Query: 179 KKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 66
+KWGFTK+ R +F KLR+E R+ DG ++ HGPL
Sbjct: 169 RKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 113 bits (273), Expect = 6e-26
Identities = 56/91 (61%), Positives = 65/91 (71%)
Frame = -2
Query: 547 FPLCVHFGVRRI*QLSSEALRQXVSAAISTS*RTAGKDQFHIRMRLHPFHVIRINKMLSC 368
FP CVH +SSEAL A ++AGKD FH+R+R+HPFHV+RINKMLSC
Sbjct: 46 FPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSC 105
Query: 367 AGADRLQTGMRGAFGKPQGTVARVRIGQPIM 275
AGADRLQTGMRGAFGK GT ARV IGQ ++
Sbjct: 106 AGADRLQTGMRGAFGKALGTCARVAIGQVLL 136
Score = 87.4 bits (207), Expect = 6e-18
Identities = 62/158 (39%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Frame = -1
Query: 527 WCPTNMTAELRGFEAXRICCNKYLVKNCGKGSVPYPHETSPFPRYPHQ*NVIMRWS**AP 348
W N+++E EA RI CNKY+VK+ GK + PF H + S
Sbjct: 55 WEKENVSSE--ALEAARIACNKYMVKSAGKDAFHLRIRVHPF----HVLRINKMLSCAGA 108
Query: 347 DWDAWCVWQASGYC-STCSHWTAHHVRAL**QWKAQ---VIEALRRAKFKFPGRQKIYVS 180
D + A G TC+ V A EALRRAKFKFPGRQKI VS
Sbjct: 109 DRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVS 168
Query: 179 KKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 66
+KWGFTK+ R ++ KLR+E R+ DG ++ HGPL
Sbjct: 169 RKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206
>At4g13965.1 68417.m02160 F-box family protein contains F-box domain
Pfam:PF00646
Length = 294
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -2
Query: 208 SPDVKRSTYQ-RSGVSQSMN-VMSLRSCVK-RAASLMTAALCSTARNMDLSTLGGRFRLR 38
S +VKR+ ++ V S++ ++ L C A L+ A R + L GGRF +
Sbjct: 71 SKNVKRALLSHKAPVLHSLHLIVHLHLCNSMNTAKLIGIAFACNLRKLVLEVDGGRFSIP 130
Query: 37 SSMYN 23
S+YN
Sbjct: 131 ESLYN 135
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 400 HVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQ 284
H+ RIN +L +D G+ G G + T+ARV Q
Sbjct: 240 HITRINSLLCLESSDVRMIGILGPPGIGKTTIARVLYDQ 278
>At5g13030.1 68418.m01494 expressed protein contains Pfam profile
PF02696: Uncharacterized ACR, YdiU/UPF0061 family
Length = 633
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 233 ALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKL 132
A+ R KF + +SKK G TKY ++ KL
Sbjct: 455 AMERYGDKFMDEYQAIMSKKLGLTKYNKEVISKL 488
>At2g30040.1 68415.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 463
Score = 27.1 bits (57), Expect = 8.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 292 CEHVLQYPEACQTHHAS 342
C+ +LQ+P CQ HH S
Sbjct: 261 CDQLLQHPFLCQDHHDS 277
>At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identical
to wall-associated kinase 2 [Arabidopsis thaliana]
GI:4826399; induced by salicylic acid or INA
(PMID:10380805)
Length = 732
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 270 CALVTVEGTGHRGSAPCQVQVPRTSKDLRIKEVGFH 163
C T + G CQ+ VPR +R+K FH
Sbjct: 147 CDSATTKNGSCSGEGCCQIPVPRGYSFVRVKPHSFH 182
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,512,230
Number of Sequences: 28952
Number of extensions: 261583
Number of successful extensions: 687
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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