Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0967.Seq
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   0.83 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   3.4  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   4.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.7  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 242  AGSSN-PAVAALMDTVPTVVMEVYHPPAVPVTLMXAQTLQDP 364
            A SSN PAV+A + T P VV  V HP   P   +    ++DP
Sbjct: 1287 AVSSNVPAVSASISTPPAVVPTVQHPQ--PTKQIPTAAVKDP 1326


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 164 HKCCYHQMYWILRCLSLNQCYWNCRWSIHFHHDSWNCLHESCYRRISWIXRCLN 3
           HK   HQ Y I+RC    +   N    +      + C H+ CY ++  + +C++
Sbjct: 406 HKFLQHQFYQIMRCALCGEFLKNAA-GMQCIDCHYTC-HKKCYPKV--VTKCIS 455


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 105 TLIQTQTAQDPVHLVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQD 248
           T+  +Q+  +  HL +A+ +      V+ VY P A+  T   +  L D
Sbjct: 149 TVFASQSNVEAAHLALASTLAAKAAPVIHVYEPDAIVTTTDPSLPLLD 196


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 408 RLLNXIHKCCYRPMTGSCKVCA 343
           +LL+  H+C Y+   GSC  C+
Sbjct: 481 KLLSCGHRCKYKCHLGSCGTCS 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,003
Number of Sequences: 5004
Number of extensions: 33965
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)