Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0967.Seq
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69...    35   0.039
01_05_0482 + 22614097-22614729,22614859-22615182,22615291-226153...    30   1.1  
01_06_0829 - 32270189-32270863                                         27   7.9  

>03_01_0085 +
           690618-691012,691114-691193,691775-691959,692363-693320,
           693391-693518,693951-694010,694113-694163,694704-694821,
           694990-695915,695916-697707,697810-697943,698029-698526
          Length = 1774

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 328 WNCRWMIHFHHDCRNCIHKCCYRRITGSCKVC 233
           WNC W  H    C   +H  CY      CKVC
Sbjct: 156 WNCGW--HICSSCEKAVHYMCYTCTYSLCKVC 185


>01_05_0482 +
           22614097-22614729,22614859-22615182,22615291-22615396,
           22615628-22615668
          Length = 367

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +3

Query: 36  VAALMKTVPRVVMKMYRPPAVPVTLIQTQTAQDPVHLVVAALMDTVPTV 182
           VAA +   P     ++ P A  +TLI    A DP+  VVA  MD V TV
Sbjct: 6   VAAALAPAPATA-PVFSPAAAGLTLIAAAAA-DPIAAVVAGAMDGVVTV 52


>01_06_0829 - 32270189-32270863
          Length = 224

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -3

Query: 236 LCLHQCYWNCRW-MIHFHHHSRNC 168
           LC H   W C +  +H H HSR C
Sbjct: 41  LCGHLFCWPCLYEWLHVHAHSREC 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,412,267
Number of Sequences: 37544
Number of extensions: 260455
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)