BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0967.Seq (568 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 35 0.039 01_05_0482 + 22614097-22614729,22614859-22615182,22615291-226153... 30 1.1 01_06_0829 - 32270189-32270863 27 7.9 >03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320, 693391-693518,693951-694010,694113-694163,694704-694821, 694990-695915,695916-697707,697810-697943,698029-698526 Length = 1774 Score = 35.1 bits (77), Expect = 0.039 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = -1 Query: 328 WNCRWMIHFHHDCRNCIHKCCYRRITGSCKVC 233 WNC W H C +H CY CKVC Sbjct: 156 WNCGW--HICSSCEKAVHYMCYTCTYSLCKVC 185 >01_05_0482 + 22614097-22614729,22614859-22615182,22615291-22615396, 22615628-22615668 Length = 367 Score = 30.3 bits (65), Expect = 1.1 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = +3 Query: 36 VAALMKTVPRVVMKMYRPPAVPVTLIQTQTAQDPVHLVVAALMDTVPTV 182 VAA + P ++ P A +TLI A DP+ VVA MD V TV Sbjct: 6 VAAALAPAPATA-PVFSPAAAGLTLIAAAAA-DPIAAVVAGAMDGVVTV 52 >01_06_0829 - 32270189-32270863 Length = 224 Score = 27.5 bits (58), Expect = 7.9 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%) Frame = -3 Query: 236 LCLHQCYWNCRW-MIHFHHHSRNC 168 LC H W C + +H H HSR C Sbjct: 41 LCGHLFCWPCLYEWLHVHAHSREC 64 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,412,267 Number of Sequences: 37544 Number of extensions: 260455 Number of successful extensions: 678 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 568 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 678 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1305140760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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