Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0967.Seq
(568 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 30 1.1
SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8) 29 2.0
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 29 3.5
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83) 29 3.5
SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1) 28 4.6
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/59 (25%), Positives = 22/59 (37%)
Frame = -3
Query: 230 LHQCYWNCRWMIHFHHHSRNCIHKCCYHQMYWILRCLSLNQCYWNCRWSIHFHHDSWNC 54
+H C CRW + C C + + R ++ C CRW I+ D C
Sbjct: 125 IHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRINRQADIHRC 179
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = -3
Query: 230 LHQCYWNCRWMIHFHHHSRNCIHKCCYHQMYWILRCLSLNQCYWNCRWSI 81
+H C CRW + C C + I R +++C CRW +
Sbjct: 142 IHTCKSTCRWRLDRQADIHTCKSTCRWR----INRQADIHRCKSTCRWQL 187
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/59 (23%), Positives = 21/59 (35%)
Frame = -3
Query: 230 LHQCYWNCRWMIHFHHHSRNCIHKCCYHQMYWILRCLSLNQCYWNCRWSIHFHHDSWNC 54
+H C CRW + C C + + R ++ C CRW + D C
Sbjct: 91 IHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTC 145
>SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 42 ALMKTVPRVVMKMYRPPAVPVTLIQTQTAQDPVHLVVAALMDTVPTVVM-EVYHPPAVPV 218
AL+ T+PR MK + I T + HL+ AL+ T+P M + YH A+ V
Sbjct: 766 ALLLTIPRHTMKQRNHLIALLVTISRHTMKQRNHLI--ALLVTIPRHTMNQRYHAIALLV 823
Query: 219 TL 224
T+
Sbjct: 824 TI 825
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 42 ALMKTVPRVVMKMYRPPAVPVTLIQTQTAQDPVHLVVAALMDTVPTVVM-EVYHPPAVPV 218
AL+ T+PR MK + I T + P H + AL+ T+P M + H A+ V
Sbjct: 496 ALLVTIPRHTMKQPNHSIALLVTIPRHTMKQPNHSI--ALLVTIPRHTMKQPNHSIALLV 553
Query: 219 TL 224
T+
Sbjct: 554 TI 555
>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
Length = 627
Score = 29.5 bits (63), Expect = 2.0
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 30 PTVAALMKTVPRVVMKMYRPPAVPV---TLIQTQTAQDPVHLVVAALMDTVPTVVMEVYH 200
P V + T+PRVV ++ P V TL + T D + VV L DT+P VV +
Sbjct: 436 PRVVTRLDTLPRVVTRLDTLPRVGTRLDTLPRIVTRLDTLQRVVTRL-DTLPRVVTRLDT 494
Query: 201 PPAVPVTL 224
P V L
Sbjct: 495 LPRVVTRL 502
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 30 PTVAALMKTVPRVVMKMYRPPAVPV---TLIQTQTAQDPVHLVVAALMDTVPTVVMEVYH 200
P V + T+PRVV ++ P V TL + T D + VV L DT+P VV +
Sbjct: 386 PRVVTRLDTLPRVVTRLDTLPRVGTRLDTLPRVVTRLDTLPRVVTRL-DTLPRVVTRLDT 444
Query: 201 PPAVPVTL 224
P V L
Sbjct: 445 LPRVVTRL 452
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 30 PTVAALMKTVPRVVMKMYRPPAVPV---TLIQTQTAQDPVHLVVAALMDTVPTVVMEVYH 200
P V + T+PRVV ++ P V TL + T D + VV L DT+P VV +
Sbjct: 486 PRVVTRLDTLPRVVTRLDTLPRVVTRLDTLPRVGTRLDTLPRVVTRL-DTLPRVVTRLDT 544
Query: 201 PPAVPVTL 224
P V L
Sbjct: 545 LPRVVTRL 552
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 30 PTVAALMKTVPRVVMKMYRPPAVPV---TLIQTQTAQDPVHLVVAALMDTVPTVVMEVYH 200
P V + T+PRVV ++ P V TL + T D + +V L DT+P VV +
Sbjct: 276 PRVVTRLDTLPRVVTRLDTLPRVVTCLDTLPRVGTRLDTLPRIVTRL-DTLPRVVTRLDT 334
Query: 201 PPAVPVTL 224
P V L
Sbjct: 335 LPRVGTRL 342
Score = 28.3 bits (60), Expect = 4.6
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 30 PTVAALMKTVPRVVMKMYRPPAVPV---TLIQTQTAQDPVHLVVAALMDTVPTVVMEVYH 200
P V + T+PRVV ++ P V TL + T D + VV L DT+P VV +
Sbjct: 208 PRVGTRLDTLPRVVTRLDTLPRVVTRLDTLPRVVTRLDTLPRVVTRL-DTLPRVVTRLDT 266
Query: 201 PPAVPV-TLMQAQTLQDPVIR 260
P + TL + T D + R
Sbjct: 267 LPRTRLDTLPRVVTRLDTLPR 287
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -1
Query: 346 CXHQCYWNCRWMIHFHHDCRNCIHKCCYR 260
C HQC C W HH+C + C R
Sbjct: 424 CEHQCEELCAWKCR-HHECTKLCGEICDR 451
>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1189
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +3
Query: 96 VPVTLIQTQTAQDPVHLVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVIRR*QHL 275
+P T + T TAQ P ++ T P E PP P +QA+T+ D I +
Sbjct: 476 LPTTRLPT-TAQTPTTILPPTTTPTPPPTTTEPQRPPDPPRN-VQARTISDSEI---EVT 530
Query: 276 WIQFRQS*WKCIIHRQF 326
WI + + K + + F
Sbjct: 531 WIPPKNTYGKVLSYNMF 547
>SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)
Length = 533
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Frame = -3
Query: 236 LCLHQCY-WNCR-WMIHFHHHSRNCIHKCCYHQMYWILRCLSLN-QCYWNC-RWS----- 84
+C+ C W + +H+ HS C H C + +C+SL+ C C +W
Sbjct: 314 ICITGCLQWRAIIYYVHYGMHSTACYHLLC--ALRDAFKCVSLSTMCITGCNQWRVIIYY 371
Query: 83 IHFHHDSWNCLHESCYRR 30
+H+ S C H C R
Sbjct: 372 VHYGTHSMACHHLLCALR 389
>SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1)
Length = 424
Score = 28.3 bits (60), Expect = 4.6
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 30 PTVAALMK-TVPRVVMKMYRPPAVPVTLIQTQTAQDPVHLVVAALMDTVPTVVMEVYHPP 206
P V L+K T +VV+ + P V VTL++ +A++ VH+ + + V T+ V H P
Sbjct: 329 PLVVTLLKVTSAKVVVHI---PLV-VTLVKVTSAKEVVHIPLVVTLVKV-TIAKVVVHIP 383
Query: 207 AVPVTLMQAQTLQ 245
V VTL++ + +
Sbjct: 384 LV-VTLVKVTSAE 395
>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/69 (20%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 30 PTVAALMKTVPRVVMKMYRPPAVPVTLIQTQTAQDPVHLV--VAALMDTVPTVVMEVYHP 203
P++ + VP + + + P++ ++ Q ++ + V V + L+ VP++ V H
Sbjct: 280 PSIKTSVTQVPSIKTSVTQVPSIKTSVTQFRSIKTLVTQVPSIKTLVTQVPSIKTSVTHV 339
Query: 204 PAVPVTLMQ 230
P++ ++ Q
Sbjct: 340 PSIKTSVTQ 348
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,870,951
Number of Sequences: 59808
Number of extensions: 296998
Number of successful extensions: 760
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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