Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0967.Seq
         (568 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ...    32   1.2  
AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens ...    32   1.6  
AK055979-1|BAB71063.1|  710|Homo sapiens protein ( Homo sapiens ...    31   2.1  
BC030023-1|AAH30023.1|  440|Homo sapiens glycosyltransferase 8 d...    31   3.7  
AJ295938-1|CAC16891.1|  260|Homo sapiens synaptobrevin like prot...    30   4.9  
BC029877-1|AAH29877.1|  107|Homo sapiens Unknown (protein for MG...    29   8.6  

>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
            protein.
          Length = 1362

 Score = 32.3 bits (70), Expect = 1.2
 Identities = 22/54 (40%), Positives = 25/54 (46%)
 Frame = +3

Query: 75   KMYRPPAVPVTLIQTQTAQDPVHLVVAALMDTVPTVVMEVYHPPAVPVTLMQAQ 236
            K  RPPAV   L QT     P        M   P V++E   PPA P+T MQ Q
Sbjct: 883  KPARPPAVSPALTQTPLLPQPP-------MAQPPQVLLEDEEPPAPPLTSMQMQ 929


>AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25557 fis, clone JTH02756. ).
          Length = 485

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +3

Query: 3   IQTAXDPGNPTVAALMKTVPRVVMKMYRPPAVPVTLIQTQTAQDPVHLVVAALMDTVPTV 182
           ++T       +V  +++T+P ++M+    P V VT+IQT  A        A     VP+ 
Sbjct: 374 METEEKEAGGSVMLILRTMPTLMMRTEDRPKVAVTMIQTAAAMGVASGAGATAAAPVPSP 433

Query: 183 VMEVYHPPAVPVTL 224
           V     P  + V L
Sbjct: 434 VAASTRPRRMAVKL 447


>AK055979-1|BAB71063.1|  710|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31417 fis, clone NT2NE2000327, weakly similar to
           GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2.1.3). ).
          Length = 710

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 60  PRVVMKMYRPPAVPVTLIQTQTAQDPVHLVVAA-LMDTVPTVVMEVYHPPAVPVTLMQAQ 236
           P V      PPAV  T+  T+ AQ PV    AA   D+     + + HPP+  +++ +  
Sbjct: 251 PPVTTSNAIPPAVVATVSATR-AQSPVITTTAAHATDSALRPTLSIQHPPSAAISIQRPA 309

Query: 237 TLQDPVIR 260
             +D   R
Sbjct: 310 QSRDVTTR 317


>BC030023-1|AAH30023.1|  440|Homo sapiens glycosyltransferase 8
           domain containing 3 protein.
          Length = 440

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 128 RCLSLNQCYWNCRWSIHFHHDSWNCLHESCYR 33
           RC   + CYWN  W +       NC  E+ +R
Sbjct: 74  RCKDFSLCYWNPYWMLPSDVCGMNCFWEAAFR 105


>AJ295938-1|CAC16891.1|  260|Homo sapiens synaptobrevin like protein
           1B protein.
          Length = 260

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 194 HFHHHSRNCIHKC-CYHQMYWI 132
           ++HHH  NC+H   C+  ++WI
Sbjct: 168 YYHHHRINCVHLYHCFTSLWWI 189


>BC029877-1|AAH29877.1|  107|Homo sapiens Unknown (protein for
           MGC:35221) protein.
          Length = 107

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 304 FHHDCRNCIHK--CCYRRITGSCKVCACI 224
           ++H C NC H   C + R  GS KV +C+
Sbjct: 39  YNHHCYNCHHHHHCYHCRTNGSSKVWSCV 67


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,681,534
Number of Sequences: 237096
Number of extensions: 1426933
Number of successful extensions: 3781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3767
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)