Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0967.Seq
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    33   0.14 
AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    32   0.33 
U37429-16|AAA79341.1|  597|Caenorhabditis elegans Protein kinase...    29   1.8  
AF025666-1|AAB88885.1|  597|Caenorhabditis elegans protein kinas...    29   1.8  
Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    29   2.3  
U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like pr...    27   9.4  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
 Frame = +3

Query: 9   TAXDPGNPTVAALMKTVPRVVMKMYRPPAVP--VTLIQTQTAQDPVHLVVAALMDTVPTV 182
           T+ +P N TVA +M   P VV+        P   T+ Q      PV +V  A  +     
Sbjct: 450 TSEEPNNTTVAQVMPPNPPVVIVDPATSEEPNDTTVAQVMPPNPPVVIVDPATSEEPNDT 509

Query: 183 VMEVYHPPAVPVTLMQAQTLQDP 251
            +    PP  PV +    T +DP
Sbjct: 510 TVAQVMPPNPPVVISGPATAKDP 532



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 9   TAXDPGNPTVAALMKTVPRVVMKMYRPPAVPVTLIQTQTAQDPVHLVVAALMDTVPTVVM 188
           T+ +P N TVA +M            PP  PV ++   T+++P    VA +M   P VV+
Sbjct: 398 TSEEPNNTTVAQVM------------PPNPPVVIVDPATSEEPNDTTVAPVMPPNPPVVI 445


>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 20/78 (25%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
 Frame = +3

Query: 9   TAXDPGNPTVAALMKTVPRVVMKMYRPPAVPVTLIQTQTA-QDPVHLVVAALMDTVPTVV 185
           T   P  PT      T P     M   P  P T+  T T    P  +       T PT +
Sbjct: 259 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTM 318

Query: 186 MEVYHPPAVPVTLMQAQT 239
                 P  P T+    T
Sbjct: 319 KSTPTTPTTPTTMKSTPT 336



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
 Frame = +3

Query: 21  PGNPTVAALMKTVPRVVMKMYRPPAVPVTLIQTQTA-QDPVHLVVAALMDTVPTVVMEVY 197
           P  PT      T P  +      P  P T+  T T    P  +       T PT +    
Sbjct: 162 PTTPTTIKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTP 221

Query: 198 HPPAVPVTLMQAQT 239
             P  P T+    T
Sbjct: 222 TTPTTPTTMKSTPT 235



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/77 (24%), Positives = 24/77 (31%)
 Frame = +3

Query: 9   TAXDPGNPTVAALMKTVPRVVMKMYRPPAVPVTLIQTQTAQDPVHLVVAALMDTVPTVVM 188
           T   P  PT      T P     M   P  P T+  T T            M + PT   
Sbjct: 373 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTP-----TTPTTMKSTPTTPT 427

Query: 189 EVYHPPAVPVTLMQAQT 239
            +   P  P T+  + T
Sbjct: 428 TMKSTPTTPSTMKSSPT 444


>U37429-16|AAA79341.1|  597|Caenorhabditis elegans Protein kinase c
           protein 3 protein.
          Length = 597

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 295 DCRNCIHKCCYRRITGSC 242
           DCR C+HK C+R +   C
Sbjct: 160 DCRLCVHKKCHRHVRTHC 177


>AF025666-1|AAB88885.1|  597|Caenorhabditis elegans protein kinase
           C3 protein.
          Length = 597

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 295 DCRNCIHKCCYRRITGSC 242
           DCR C+HK C+R +   C
Sbjct: 160 DCRLCVHKKCHRHVRTHC 177


>Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical
           protein C36A4.8 protein.
          Length = 547

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 304 FHHDCRNCIHKCCYRRITGSCKVCACI 224
           FH  CR+CI+ C  R+    C +C  +
Sbjct: 37  FHIFCRSCINACFERKRKVQCPICRSV 63


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 346 CXHQCYWNCRWMIHFHHDCRNC 281
           C   C+W CR  +  HH C NC
Sbjct: 58  CFIVCFW-CRCFMDVHHRCPNC 78


>U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like
           protein family protein11 protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 30  PTVAALMKTVPRVVMKMYRPPAVPVTLIQTQTAQD-PVHLVVAALMDTVPTVVMEVYHPP 206
           PT+  + + +P  +  +  P  +P+TL   +  +  P  L    + DT+P  +     P 
Sbjct: 187 PTIK-IPEIIPLTLPTVKIPDIIPITLPTIKIPEIVPTKLPTVEVPDTIPKTLPTTKIPD 245

Query: 207 AVPVT 221
            VP+T
Sbjct: 246 IVPIT 250


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +3

Query: 24   GNPTVAALMKTVPRVVMKMYRPPAVPVTLIQTQTA-QDPVHLVVAALMDTVPTVVMEVYH 200
            G P V +L+KT      ++Y    + +      TA Q+ +  ++A    T+ TV M    
Sbjct: 1094 GQPFVISLIKTANS--HQIYGNGQLLINFGYRGTASQNLIGSMIAYRESTIDTVSMACVR 1151

Query: 201  PPAVPVTLMQAQTLQDP 251
            PP  P T     T   P
Sbjct: 1152 PPTTPTTTTSTTTTTTP 1168


>AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical
           protein C45G7.4 protein.
          Length = 603

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 188 HHHSRNCIHKCCYHQMYWILRCLSLNQC 105
           H+   +CI   C HQ Y++L  +    C
Sbjct: 45  HNFCESCIFSLCLHQEYYLLDSIKCPTC 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,783,897
Number of Sequences: 27780
Number of extensions: 212882
Number of successful extensions: 661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)