Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0967.Seq
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    27   0.13 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    27   0.13 

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 176 RNCIHKCCYHQMYWILRCLS-LNQCYW 99
           RNCIH   +  ++W+  C S +N C +
Sbjct: 36  RNCIHPTVFSVLFWLGYCNSAINPCIY 62



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 5/17 (29%), Positives = 10/17 (58%)
 Frame = -3

Query: 59 NCLHESCYRRISWIXRC 9
          NC+H + +  + W+  C
Sbjct: 37 NCIHPTVFSVLFWLGYC 53


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 176 RNCIHKCCYHQMYWILRCLS-LNQCYW 99
           RNCIH   +  ++W+  C S +N C +
Sbjct: 484 RNCIHPTVFSVLFWLGYCNSAINPCIY 510



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 5/17 (29%), Positives = 10/17 (58%)
 Frame = -3

Query: 59  NCLHESCYRRISWIXRC 9
           NC+H + +  + W+  C
Sbjct: 485 NCIHPTVFSVLFWLGYC 501


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,191
Number of Sequences: 438
Number of extensions: 2447
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)