BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0967.Seq (568 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family prote... 32 0.23 At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 31 0.71 At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 2.9 At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 2.9 At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 28 5.0 At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 27 8.7 >At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family protein low similarity to SP|Q02104 Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase) {Psychrobacter immobilis}, SP|P27747|ACOC_ALCEU Dihydrolipoamide acetyltransferase component of acetoin cleaving system (EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes eutrophus}; contains Pfam profile PF00561: hydrolase, alpha/beta fold family Length = 417 Score = 32.3 bits (70), Expect = 0.23 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 3/44 (6%) Frame = -3 Query: 170 CIHKCCYHQMY-WILR-CLSLNQCYWNCR-WSIHFHHDSWNCLH 48 C C +H+++ W+++ C+ + +W + + H HH +W+ +H Sbjct: 292 CFIICKHHKIWEWLIKLCIGKREIHWKIKDITRHTHHSAWHSMH 335 >At3g61670.1 68416.m06911 expressed protein weak similarity to extra-large G-protein [Arabidopsis thaliana] GI:3201682 Length = 790 Score = 30.7 bits (66), Expect = 0.71 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -3 Query: 194 HFHHHSRNCIHKCCYHQMYW 135 HFHH S +C H CY YW Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339 >At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein similar to hect domain and RLD 2 GB:NP_004658 [Homo sapiens]; contains Pfam PF00415: Regulator of chromosome condensation (RCC1); contains Pfam PF00023: Ankyrin repeat; similar to rjs (GI:3414809) [Mus musculus]; similar to HERC2 (GI:4079809) [Homo sapiens] Length = 1081 Score = 28.7 bits (61), Expect = 2.9 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 156 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 245 A+ +T VV +YHP P+ L ++QTLQ Sbjct: 497 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 526 Score = 27.9 bits (59), Expect = 5.0 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +2 Query: 269 ALMDTVPTVVMEVYHPPAVPVTLMXAQTLQ 358 A+ +T VV +YHP P+ L +QTLQ Sbjct: 497 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 526 >At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein similar to hect domain and RLD 2 GB:NP_004658 [Homo sapiens]; contains Pfam PF00415: Regulator of chromosome condensation (RCC1); contains Pfam PF00023: Ankyrin repeat; similar to rjs (GI:3414809) [Mus musculus]; similar to HERC2 (GI:4079809) [Homo sapiens] Length = 1078 Score = 28.7 bits (61), Expect = 2.9 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 156 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 245 A+ +T VV +YHP P+ L ++QTLQ Sbjct: 494 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 523 Score = 27.9 bits (59), Expect = 5.0 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +2 Query: 269 ALMDTVPTVVMEVYHPPAVPVTLMXAQTLQ 358 A+ +T VV +YHP P+ L +QTLQ Sbjct: 494 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 523 >At5g08730.1 68418.m01037 IBR domain-containing protein contains similarity to Swiss-Prot:Q94981 ariadne-1 protein (Ari-1) [Drosophila melanogaster] Length = 500 Score = 27.9 bits (59), Expect = 5.0 Identities = 9/29 (31%), Positives = 14/29 (48%) Frame = -3 Query: 140 YWILRCLSLNQCYWNCRWSIHFHHDSWNC 54 Y ++ C+ N W C + H +WNC Sbjct: 256 YRLINCICSNNFCWICLRTEEQHQGNWNC 284 >At5g14920.1 68418.m01750 gibberellin-regulated family protein similar to SP|P46689 Gibberellin-regulated protein 1 precursor {Arabidopsis thaliana}; contains Pfam profile PF02704: Gibberellin regulated protein Length = 275 Score = 27.1 bits (57), Expect = 8.7 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Frame = +3 Query: 81 YRPPAVPVTLIQTQTAQDPVHLVVAALMDTVPTV-VMEVYHPPAVPVT 221 Y+PP +P T I+ T + PV + P V + PP P T Sbjct: 59 YKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPVSTPPIKLPPVQPPT 106 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,168,878 Number of Sequences: 28952 Number of extensions: 190722 Number of successful extensions: 490 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 414 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 488 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1092379416 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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