Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0967.Seq
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family prote...    32   0.23 
At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    31   0.71 
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat...    29   2.9  
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat...    29   2.9  
At5g08730.1 68418.m01037 IBR domain-containing protein contains ...    28   5.0  
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    27   8.7  

>At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family protein
           low similarity to SP|Q02104 Lipase 1 precursor (EC
           3.1.1.3) (Triacylglycerol lipase) {Psychrobacter
           immobilis}, SP|P27747|ACOC_ALCEU Dihydrolipoamide
           acetyltransferase component of acetoin cleaving system
           (EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
           eutrophus}; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 417

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -3

Query: 170 CIHKCCYHQMY-WILR-CLSLNQCYWNCR-WSIHFHHDSWNCLH 48
           C   C +H+++ W+++ C+   + +W  +  + H HH +W+ +H
Sbjct: 292 CFIICKHHKIWEWLIKLCIGKREIHWKIKDITRHTHHSAWHSMH 335


>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 194 HFHHHSRNCIHKCCYHQMYW 135
           HFHH S +C H  CY   YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339


>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
           of chromosome condensation (RCC1) family protein similar
           to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
           contains Pfam PF00415: Regulator of chromosome
           condensation (RCC1); contains Pfam PF00023: Ankyrin
           repeat; similar to rjs (GI:3414809) [Mus musculus];
           similar to  HERC2 (GI:4079809) [Homo sapiens]
          Length = 1081

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 156 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 245
           A+ +T   VV  +YHP   P+ L ++QTLQ
Sbjct: 497 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 526



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 269 ALMDTVPTVVMEVYHPPAVPVTLMXAQTLQ 358
           A+ +T   VV  +YHP   P+ L  +QTLQ
Sbjct: 497 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 526


>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
           of chromosome condensation (RCC1) family protein similar
           to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
           contains Pfam PF00415: Regulator of chromosome
           condensation (RCC1); contains Pfam PF00023: Ankyrin
           repeat; similar to rjs (GI:3414809) [Mus musculus];
           similar to  HERC2 (GI:4079809) [Homo sapiens]
          Length = 1078

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 156 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 245
           A+ +T   VV  +YHP   P+ L ++QTLQ
Sbjct: 494 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 523



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 269 ALMDTVPTVVMEVYHPPAVPVTLMXAQTLQ 358
           A+ +T   VV  +YHP   P+ L  +QTLQ
Sbjct: 494 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 523


>At5g08730.1 68418.m01037 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster]
          Length = 500

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 140 YWILRCLSLNQCYWNCRWSIHFHHDSWNC 54
           Y ++ C+  N   W C  +   H  +WNC
Sbjct: 256 YRLINCICSNNFCWICLRTEEQHQGNWNC 284


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 81  YRPPAVPVTLIQTQTAQDPVHLVVAALMDTVPTV-VMEVYHPPAVPVT 221
           Y+PP +P T I+  T + PV      +    P V    +  PP  P T
Sbjct: 59  YKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPVSTPPIKLPPVQPPT 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,168,878
Number of Sequences: 28952
Number of extensions: 190722
Number of successful extensions: 490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)