Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0966.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    54   6e-09
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    54   6e-09
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    54   6e-09
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    33   0.012
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   3.3  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   4.3  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 54.4 bits (125), Expect = 6e-09
 Identities = 25/34 (73%), Positives = 29/34 (85%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AVK 297
           P+CVE+F  + PLGR AVRDMRQTVAVGVI AV+
Sbjct: 407 PMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVE 440


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 54.4 bits (125), Expect = 6e-09
 Identities = 25/34 (73%), Positives = 29/34 (85%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AVK 297
           P+CVE+F  + PLGR AVRDMRQTVAVGVI AV+
Sbjct: 407 PMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVE 440


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 54.4 bits (125), Expect = 6e-09
 Identities = 25/34 (73%), Positives = 29/34 (85%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AVK 297
           P+CVE+F  + PLGR AVRDMRQTVAVGVI AV+
Sbjct: 407 PMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVE 440


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 33.5 bits (73), Expect = 0.012
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
           P+C+E F+ +  +GR  +RD   TVAVG +
Sbjct: 628 PVCMERFEDYQYMGRFTLRDQGTTVAVGKV 657


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
           PLC+   ++ P LGR  +R    TVA G++
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIV 588


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -2

Query: 173 GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 78
           G S E     S+   IFY       FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,392,583
Number of Sequences: 5004
Number of extensions: 22339
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)