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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0966.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0548 + 4099386-4099847,4100435-4101316                           53   1e-07
03_01_0547 + 4093196-4093657,4094267-4095148                           53   1e-07
03_01_0544 + 4082528-4082989,4083585-4084466                           53   1e-07
03_01_0543 + 4076981-4077442,4078145-4079026                           53   1e-07
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165...    33   0.063
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558...    33   0.063
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623...    32   0.15 
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903     29   1.8  
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299...    27   5.5  
03_02_0827 + 11582974-11583027,11583210-11584358                       27   7.2  

>03_01_0548 + 4099386-4099847,4100435-4101316
          Length = 447

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
           P+ VE+F ++PPLGR AVRDMRQTVAVGVI
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVI 426


>03_01_0547 + 4093196-4093657,4094267-4095148
          Length = 447

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
           P+ VE+F ++PPLGR AVRDMRQTVAVGVI
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVI 426


>03_01_0544 + 4082528-4082989,4083585-4084466
          Length = 447

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
           P+ VE+F ++PPLGR AVRDMRQTVAVGVI
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVI 426


>03_01_0543 + 4076981-4077442,4078145-4079026
          Length = 447

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
           P+ VE+F ++PPLGR AVRDMRQTVAVGVI
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVI 426


>04_04_1015 -
           30115377-30115477,30115570-30115615,30116491-30116590,
           30116676-30116771,30119519-30119556,30119623-30119733,
           30119820-30119951,30120024-30120263,30120532-30120700,
           30120994-30121493,30121581-30121691,30121802-30122133,
           30122603-30122737,30122839-30122988,30123809-30123947
          Length = 799

 Score = 33.5 bits (73), Expect = 0.063
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
           P+CV+ F K   LGR  +R    T+AVGV+
Sbjct: 642 PVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671


>04_04_1008 -
           30054674-30054774,30054867-30054912,30055788-30055887,
           30055973-30056068,30058816-30058853,30058920-30059030,
           30059117-30059248,30059321-30059560,30059829-30059997,
           30060291-30060790,30060878-30060988,30061099-30061430,
           30061900-30062034,30062136-30062285,30063106-30063244
          Length = 799

 Score = 33.5 bits (73), Expect = 0.063
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
           P+CV+ F K   LGR  +R    T+AVGV+
Sbjct: 642 PVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671


>04_04_1593 -
           34661670-34661798,34661882-34661989,34662129-34662368,
           34662614-34662782,34662872-34663362,34663681-34663991,
           34664396-34664473,34665034-34665228,34665363-34665524,
           34665759-34665840
          Length = 654

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 395 LCVESFQKFPPLGRXAVRDMRQTVAVGVI*AVKLQ 291
           +CVE F     LGR  +R    T+AVG++  V+ Q
Sbjct: 619 VCVEEFSNLKALGRVFLRSQGNTIAVGIVSRVREQ 653


>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
          Length = 1135

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 89  NYKIMLHYKPCKKYRKGMSL*P-FFPSK 169
           N   M    PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684


>04_03_0107 +
           11328267-11328276,11329059-11329170,11329862-11329907,
           11330185-11330256,11332292-11332303,11332880-11332942,
           11333038-11333192,11333303-11333367,11334645-11334795,
           11335230-11335335,11335440-11335575,11336310-11336374,
           11337003-11337188,11337298-11337399
          Length = 426

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 395 LCVESFQKFPPLGRXAVR 342
           +C+E+F  FP LGR  +R
Sbjct: 398 ICIENFSDFPQLGRFTLR 415


>03_02_0827 + 11582974-11583027,11583210-11584358
          Length = 400

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = -1

Query: 297 TSRRLVVARSLKLPKGHQGQE----VAXAVXSTIFHTTADTSFTKRCFEGKKGY-KLIPF 133
           TSR  V A  L LP+  +G++    V  ++   IF+  AD     RC    K +  L+P 
Sbjct: 18  TSRHRVFAEDLLLPREAEGEDHFDRVPDSLVLLIFNRLADARSLGRCSAVSKRFNSLVPL 77

Query: 132 L 130
           +
Sbjct: 78  V 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,162,514
Number of Sequences: 37544
Number of extensions: 146286
Number of successful extensions: 256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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