BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0966.Seq (399 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_01_0548 + 4099386-4099847,4100435-4101316 53 1e-07 03_01_0547 + 4093196-4093657,4094267-4095148 53 1e-07 03_01_0544 + 4082528-4082989,4083585-4084466 53 1e-07 03_01_0543 + 4076981-4077442,4078145-4079026 53 1e-07 04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 33 0.063 04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 33 0.063 04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 32 0.15 11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 1.8 04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 27 5.5 03_02_0827 + 11582974-11583027,11583210-11584358 27 7.2 >03_01_0548 + 4099386-4099847,4100435-4101316 Length = 447 Score = 52.8 bits (121), Expect = 1e-07 Identities = 23/30 (76%), Positives = 27/30 (90%) Frame = -2 Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309 P+ VE+F ++PPLGR AVRDMRQTVAVGVI Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVI 426 >03_01_0547 + 4093196-4093657,4094267-4095148 Length = 447 Score = 52.8 bits (121), Expect = 1e-07 Identities = 23/30 (76%), Positives = 27/30 (90%) Frame = -2 Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309 P+ VE+F ++PPLGR AVRDMRQTVAVGVI Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVI 426 >03_01_0544 + 4082528-4082989,4083585-4084466 Length = 447 Score = 52.8 bits (121), Expect = 1e-07 Identities = 23/30 (76%), Positives = 27/30 (90%) Frame = -2 Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309 P+ VE+F ++PPLGR AVRDMRQTVAVGVI Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVI 426 >03_01_0543 + 4076981-4077442,4078145-4079026 Length = 447 Score = 52.8 bits (121), Expect = 1e-07 Identities = 23/30 (76%), Positives = 27/30 (90%) Frame = -2 Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309 P+ VE+F ++PPLGR AVRDMRQTVAVGVI Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVI 426 >04_04_1015 - 30115377-30115477,30115570-30115615,30116491-30116590, 30116676-30116771,30119519-30119556,30119623-30119733, 30119820-30119951,30120024-30120263,30120532-30120700, 30120994-30121493,30121581-30121691,30121802-30122133, 30122603-30122737,30122839-30122988,30123809-30123947 Length = 799 Score = 33.5 bits (73), Expect = 0.063 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -2 Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309 P+CV+ F K LGR +R T+AVGV+ Sbjct: 642 PVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671 >04_04_1008 - 30054674-30054774,30054867-30054912,30055788-30055887, 30055973-30056068,30058816-30058853,30058920-30059030, 30059117-30059248,30059321-30059560,30059829-30059997, 30060291-30060790,30060878-30060988,30061099-30061430, 30061900-30062034,30062136-30062285,30063106-30063244 Length = 799 Score = 33.5 bits (73), Expect = 0.063 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -2 Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309 P+CV+ F K LGR +R T+AVGV+ Sbjct: 642 PVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671 >04_04_1593 - 34661670-34661798,34661882-34661989,34662129-34662368, 34662614-34662782,34662872-34663362,34663681-34663991, 34664396-34664473,34665034-34665228,34665363-34665524, 34665759-34665840 Length = 654 Score = 32.3 bits (70), Expect = 0.15 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -2 Query: 395 LCVESFQKFPPLGRXAVRDMRQTVAVGVI*AVKLQ 291 +CVE F LGR +R T+AVG++ V+ Q Sbjct: 619 VCVEEFSNLKALGRVFLRSQGNTIAVGIVSRVREQ 653 >11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 Length = 1135 Score = 28.7 bits (61), Expect = 1.8 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = +2 Query: 89 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 169 N M PCKK +KGM++ P FF SK Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684 >04_03_0107 + 11328267-11328276,11329059-11329170,11329862-11329907, 11330185-11330256,11332292-11332303,11332880-11332942, 11333038-11333192,11333303-11333367,11334645-11334795, 11335230-11335335,11335440-11335575,11336310-11336374, 11337003-11337188,11337298-11337399 Length = 426 Score = 27.1 bits (57), Expect = 5.5 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -2 Query: 395 LCVESFQKFPPLGRXAVR 342 +C+E+F FP LGR +R Sbjct: 398 ICIENFSDFPQLGRFTLR 415 >03_02_0827 + 11582974-11583027,11583210-11584358 Length = 400 Score = 26.6 bits (56), Expect = 7.2 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = -1 Query: 297 TSRRLVVARSLKLPKGHQGQE----VAXAVXSTIFHTTADTSFTKRCFEGKKGY-KLIPF 133 TSR V A L LP+ +G++ V ++ IF+ AD RC K + L+P Sbjct: 18 TSRHRVFAEDLLLPREAEGEDHFDRVPDSLVLLIFNRLADARSLGRCSAVSKRFNSLVPL 77 Query: 132 L 130 + Sbjct: 78 V 78 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,162,514 Number of Sequences: 37544 Number of extensions: 146286 Number of successful extensions: 256 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 253 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 256 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 682720236 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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