Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0966.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 53 1e-07
03_01_0547 + 4093196-4093657,4094267-4095148 53 1e-07
03_01_0544 + 4082528-4082989,4083585-4084466 53 1e-07
03_01_0543 + 4076981-4077442,4078145-4079026 53 1e-07
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 33 0.063
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 33 0.063
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 32 0.15
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 1.8
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 27 5.5
03_02_0827 + 11582974-11583027,11583210-11584358 27 7.2
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 52.8 bits (121), Expect = 1e-07
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = -2
Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
P+ VE+F ++PPLGR AVRDMRQTVAVGVI
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVI 426
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 52.8 bits (121), Expect = 1e-07
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = -2
Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
P+ VE+F ++PPLGR AVRDMRQTVAVGVI
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVI 426
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 52.8 bits (121), Expect = 1e-07
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = -2
Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
P+ VE+F ++PPLGR AVRDMRQTVAVGVI
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVI 426
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 52.8 bits (121), Expect = 1e-07
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = -2
Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
P+ VE+F ++PPLGR AVRDMRQTVAVGVI
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVI 426
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 33.5 bits (73), Expect = 0.063
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
P+CV+ F K LGR +R T+AVGV+
Sbjct: 642 PVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 33.5 bits (73), Expect = 0.063
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
P+CV+ F K LGR +R T+AVGV+
Sbjct: 642 PVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 32.3 bits (70), Expect = 0.15
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 395 LCVESFQKFPPLGRXAVRDMRQTVAVGVI*AVKLQ 291
+CVE F LGR +R T+AVG++ V+ Q
Sbjct: 619 VCVEEFSNLKALGRVFLRSQGNTIAVGIVSRVREQ 653
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 89 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 169
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 395 LCVESFQKFPPLGRXAVR 342
+C+E+F FP LGR +R
Sbjct: 398 ICIENFSDFPQLGRFTLR 415
>03_02_0827 + 11582974-11583027,11583210-11584358
Length = 400
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = -1
Query: 297 TSRRLVVARSLKLPKGHQGQE----VAXAVXSTIFHTTADTSFTKRCFEGKKGY-KLIPF 133
TSR V A L LP+ +G++ V ++ IF+ AD RC K + L+P
Sbjct: 18 TSRHRVFAEDLLLPREAEGEDHFDRVPDSLVLLIFNRLADARSLGRCSAVSKRFNSLVPL 77
Query: 132 L 130
+
Sbjct: 78 V 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,162,514
Number of Sequences: 37544
Number of extensions: 146286
Number of successful extensions: 256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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