Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0966.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 57   6e-09
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            30   0.60 
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)            27   5.6  
SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)                   27   7.4  
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)                    27   7.4  
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.4  
SB_54688| Best HMM Match : DUF963 (HMM E-Value=0.017)                  26   9.8  
SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 56.8 bits (131), Expect = 6e-09
 Identities = 25/33 (75%), Positives = 30/33 (90%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AV 300
           P+CVE+F +FPPLGR AVRDM+QTVAVGVI +V
Sbjct: 268 PMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSV 300


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
           P+CVE ++ +  LGR  +R    T+A GVI
Sbjct: 49  PVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78


>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
          Length = 921

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 351 CCP*HEADSCCXSHLGCQTSRRLVVARSLKLPKGHQGQEV 232
           C P  E +S C  +  C+  ++ V+A S + P+ H+  EV
Sbjct: 267 CVPNKEGNSICSKYYRCKACKK-VLAYSKRHPRDHKCGEV 305


>SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)
          Length = 461

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 170 VSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHXISE 60
           V K+KR   SFL    Y    V +F ++ +V+H ++E
Sbjct: 18  VPKKKRELQSFLGLCTYYRKYVKMFADIARVLHRLTE 54


>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
          Length = 495

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 298 LTA*MTPTATVCLMSRTAXRPRGGNFWXDSTHR 396
           LT+   PT    L  RT  +PR G  W  + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441


>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 89  NYKIMLHYKPCKKYRKGMSL*PF 157
           +YK  L  KPCK +R+G    PF
Sbjct: 253 DYKSALGAKPCKYFREGKGTCPF 275


>SB_54688| Best HMM Match : DUF963 (HMM E-Value=0.017)
          Length = 319

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 158 KRATNSFLFYIFYKACNVTLFYNLYKVIHXISETFCY 48
           +RATN +L    Y A N+    NLY   +  S T  Y
Sbjct: 218 RRATNLYLATNLYSATNLYSATNLYSATNLYSATNLY 254


>SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 366 TPRSXCCP*HEADSCCXSHLGCQTSRRLVVARSLKLPKGHQGQEV 232
           T    CCP  E  +C  S   C T ++  +A+ LK  +  +G+ V
Sbjct: 386 TSHRDCCPGFEGSNCEKSCYNCSTFQQ--IAKRLKAVENVRGRYV 428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,474,692
Number of Sequences: 59808
Number of extensions: 164253
Number of successful extensions: 316
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)