Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0966.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    56   7e-09
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    56   7e-09
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    56   7e-09
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    33   0.100
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    30   0.70 
AL117207-8|CAB60399.1|  362|Caenorhabditis elegans Hypothetical ...    29   1.6  
AC024753-11|AAF60461.1|  369|Caenorhabditis elegans Hypothetical...    26   8.7  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 56.4 bits (130), Expect = 7e-09
 Identities = 27/38 (71%), Positives = 30/38 (78%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AVKLQGG 285
           PLCVESF  + PLGR AVRDMRQTVAVGVI +V+   G
Sbjct: 375 PLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDG 412


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 56.4 bits (130), Expect = 7e-09
 Identities = 27/38 (71%), Positives = 30/38 (78%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AVKLQGG 285
           PLCVESF  + PLGR AVRDMRQTVAVGVI +V+   G
Sbjct: 409 PLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDG 446


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 56.4 bits (130), Expect = 7e-09
 Identities = 27/38 (71%), Positives = 30/38 (78%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AVKLQGG 285
           PLCVESF  + PLGR AVRDMRQTVAVGVI +V+   G
Sbjct: 409 PLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDG 446


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 32.7 bits (71), Expect = 0.100
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
           P  +E F+++P LGR  +RD  +T+A+G +
Sbjct: 498 PFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 158 KRATNSFLFYIFYKACNVTLFYNLYKVIHXISETFC 51
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


>AL117207-8|CAB60399.1|  362|Caenorhabditis elegans Hypothetical
           protein Y60A3A.14 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 149 TNSFLFYIFYKACNVTLFY-NLYKVIHXISETFCY 48
           T S  F + + AC   LFY N Y     + +TFCY
Sbjct: 174 TISLYFLLPFTACTAILFYFNKYPSRVFVGDTFCY 208


>AC024753-11|AAF60461.1|  369|Caenorhabditis elegans Hypothetical
           protein Y23H5B.1 protein.
          Length = 369

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 233 TSCPWWPFGSFSDLATTSLLE 295
           T C W  FGS+S L T S+++
Sbjct: 284 TFCLWMMFGSYSVLVTVSIIK 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,899,798
Number of Sequences: 27780
Number of extensions: 130897
Number of successful extensions: 236
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)