Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0966.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    60   7e-12
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    60   9e-12
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   5.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   5.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   5.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.1  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 60.5 bits (140), Expect = 7e-12
 Identities = 27/33 (81%), Positives = 31/33 (93%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AV 300
           P+CVE+FQ+FPPLGR AVRDMRQTVAVGVI +V
Sbjct: 409 PMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSV 441


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 60.1 bits (139), Expect = 9e-12
 Identities = 27/33 (81%), Positives = 30/33 (90%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AV 300
           P+C E+FQ+FPPLGR AVRDMRQTVAVGVI AV
Sbjct: 409 PMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAV 441


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 199 CMKNCAXNSXSYFLPLVAFRQL**PCH 279
           C+KN A    SYF+  + F  +   C+
Sbjct: 98  CLKNSADTISSYFVGKMYFNLIDTKCY 124


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 199 CMKNCAXNSXSYFLPLVAFRQL**PCH 279
           C+KN A    SYF+  + F  +   C+
Sbjct: 103 CLKNSADTISSYFVGKMYFNLIDTKCY 129


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 199 CMKNCAXNSXSYFLPLVAFRQL**PCH 279
           C+KN A    SYF+  + F  +   C+
Sbjct: 103 CLKNSADTISSYFVGKMYFNLIDTKCY 129


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 11/44 (25%), Positives = 16/44 (36%)
 Frame = +2

Query: 176 LVNEVSAVV*KIVLXTAXATSCPWWPFGSFSDLATTSLLEV*QP 307
           L+N     +   +L  +  TSC W   G     +    L V  P
Sbjct: 10  LINAAFLCLASTILSESAGTSCKWLSEGGNDTRSADCTLRVLDP 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,013
Number of Sequences: 438
Number of extensions: 1601
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)