BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0966.Seq (399 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 53 6e-08 At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 53 6e-08 At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 53 6e-08 At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 53 6e-08 At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 49 1e-06 At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 34 0.030 At3g21150.1 68416.m02672 zinc finger (B-box type) family protein... 33 0.053 At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 31 0.37 At1g69720.1 68414.m08023 heme oxygenase 3 (HO3) similar to heme ... 29 1.1 At2g04500.1 68415.m00455 DC1 domain-containing protein contains ... 27 6.1 >At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana] Length = 449 Score = 53.2 bits (122), Expect = 6e-08 Identities = 24/33 (72%), Positives = 29/33 (87%) Frame = -2 Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AV 300 P+ VE+F ++PPLGR AVRDMRQTVAVGVI +V Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 429 >At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 53.2 bits (122), Expect = 6e-08 Identities = 24/33 (72%), Positives = 29/33 (87%) Frame = -2 Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AV 300 P+ VE+F ++PPLGR AVRDMRQTVAVGVI +V Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 429 >At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 53.2 bits (122), Expect = 6e-08 Identities = 24/33 (72%), Positives = 29/33 (87%) Frame = -2 Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AV 300 P+ VE+F ++PPLGR AVRDMRQTVAVGVI +V Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 429 >At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 53.2 bits (122), Expect = 6e-08 Identities = 24/33 (72%), Positives = 29/33 (87%) Frame = -2 Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AV 300 P+ VE+F ++PPLGR AVRDMRQTVAVGVI +V Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 429 >At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-containing protein similar to SP|P13905 Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis thaliana}; contains Pfam profile PF03143: Elongation factor Tu C-terminal domain Length = 104 Score = 49.2 bits (112), Expect = 1e-06 Identities = 21/33 (63%), Positives = 27/33 (81%) Frame = -2 Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AV 300 P+ VE++ +PPLGR A+RDMRQTV VGVI +V Sbjct: 63 PMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95 >At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein, putative similar to EF-1-alpha-related GTP-binding protein gi|1009232|gb|AAA79032 Length = 532 Score = 34.3 bits (75), Expect = 0.030 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -2 Query: 395 LCVESFQKFPPLGRXAVRDMRQTVAVGVI 309 +C+E F FP LGR +R +T+AVG + Sbjct: 494 ICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522 >At3g21150.1 68416.m02672 zinc finger (B-box type) family protein contains Pfam profile:PF01760 CONSTANS family zinc finger Length = 225 Score = 33.5 bits (73), Expect = 0.053 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Frame = -1 Query: 378 PEIP-TPRSXCCP*HEADSCCXSHLGCQTSRRL-VVARSLKLPKGHQGQEVAXAVXSTIF 205 P +P PR+ CC + SCC S L C +S L R + +G + + A AV T+ Sbjct: 61 PLLPWPPRTTCCSESSSSSCC-SSLDCVSSSELSSTTRDVNRARGRENRVNAKAVAVTV- 118 Query: 204 HTTADTSFTKRCFEGKKG 151 AD F C GK G Sbjct: 119 ---ADGIFVNWC--GKLG 131 >At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / EF-1-alpha, putative contains similarity to SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha) [Aeropyrum pernix] Length = 667 Score = 30.7 bits (66), Expect = 0.37 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -2 Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309 P+CVE+F + LGR +R +TVA+G + Sbjct: 631 PVCVETFSESRALGRVFLRSSGRTVAMGKV 660 >At1g69720.1 68414.m08023 heme oxygenase 3 (HO3) similar to heme oxygenase 3 [Arabidopsis thaliana] gi|14485563|gb|AAK63006 Length = 285 Score = 29.1 bits (62), Expect = 1.1 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Frame = -1 Query: 321 CXSHLGCQTSRRLVVARSLKLPKGHQGQEVAXAVXSTIFHTTADTSFTKRCFEGK-KGY 148 C S+LG +T+ R+ AR+L P+G+ + A +++ A T ++ + G+ KG+ Sbjct: 20 CESYLGLRTTGRISYARTLTAPRGYLAVK-ANGGQASVVTAAAITEKQQKKYPGESKGF 77 >At2g04500.1 68415.m00455 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 495 Score = 26.6 bits (56), Expect = 6.1 Identities = 7/15 (46%), Positives = 12/15 (80%) Frame = -2 Query: 68 ISETFCYDCKLKCKF 24 ++ FC+ C+L+CKF Sbjct: 446 VTRPFCFHCELRCKF 460 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,355,880 Number of Sequences: 28952 Number of extensions: 117540 Number of successful extensions: 238 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 234 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 237 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 575830496 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -