Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0966.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...    53   6e-08
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...    53   6e-08
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...    53   6e-08
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...    53   6e-08
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-...    49   1e-06
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    34   0.030
At3g21150.1 68416.m02672 zinc finger (B-box type) family protein...    33   0.053
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    31   0.37 
At1g69720.1 68414.m08023 heme oxygenase 3 (HO3) similar to heme ...    29   1.1  
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ...    27   6.1  

>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score = 53.2 bits (122), Expect = 6e-08
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AV 300
           P+ VE+F ++PPLGR AVRDMRQTVAVGVI +V
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 429


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 53.2 bits (122), Expect = 6e-08
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AV 300
           P+ VE+F ++PPLGR AVRDMRQTVAVGVI +V
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 429


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 53.2 bits (122), Expect = 6e-08
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AV 300
           P+ VE+F ++PPLGR AVRDMRQTVAVGVI +V
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 429


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 53.2 bits (122), Expect = 6e-08
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AV 300
           P+ VE+F ++PPLGR AVRDMRQTVAVGVI +V
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 429


>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
           domain-containing protein similar to SP|P13905
           Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
           thaliana}; contains Pfam profile PF03143: Elongation
           factor Tu C-terminal domain
          Length = 104

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI*AV 300
           P+ VE++  +PPLGR A+RDMRQTV VGVI +V
Sbjct: 63  PMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95


>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 34.3 bits (75), Expect = 0.030
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 395 LCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
           +C+E F  FP LGR  +R   +T+AVG +
Sbjct: 494 ICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522


>At3g21150.1 68416.m02672 zinc finger (B-box type) family protein
           contains Pfam profile:PF01760 CONSTANS family zinc
           finger
          Length = 225

 Score = 33.5 bits (73), Expect = 0.053
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -1

Query: 378 PEIP-TPRSXCCP*HEADSCCXSHLGCQTSRRL-VVARSLKLPKGHQGQEVAXAVXSTIF 205
           P +P  PR+ CC    + SCC S L C +S  L    R +   +G + +  A AV  T+ 
Sbjct: 61  PLLPWPPRTTCCSESSSSSCC-SSLDCVSSSELSSTTRDVNRARGRENRVNAKAVAVTV- 118

Query: 204 HTTADTSFTKRCFEGKKG 151
              AD  F   C  GK G
Sbjct: 119 ---ADGIFVNWC--GKLG 131


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 398 PLCVESFQKFPPLGRXAVRDMRQTVAVGVI 309
           P+CVE+F +   LGR  +R   +TVA+G +
Sbjct: 631 PVCVETFSESRALGRVFLRSSGRTVAMGKV 660


>At1g69720.1 68414.m08023 heme oxygenase 3 (HO3) similar to heme
           oxygenase 3 [Arabidopsis thaliana]
           gi|14485563|gb|AAK63006
          Length = 285

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -1

Query: 321 CXSHLGCQTSRRLVVARSLKLPKGHQGQEVAXAVXSTIFHTTADTSFTKRCFEGK-KGY 148
           C S+LG +T+ R+  AR+L  P+G+   + A    +++    A T   ++ + G+ KG+
Sbjct: 20  CESYLGLRTTGRISYARTLTAPRGYLAVK-ANGGQASVVTAAAITEKQQKKYPGESKGF 77


>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 495

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 68  ISETFCYDCKLKCKF 24
           ++  FC+ C+L+CKF
Sbjct: 446 VTRPFCFHCELRCKF 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,355,880
Number of Sequences: 28952
Number of extensions: 117540
Number of successful extensions: 238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)