Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0965.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   2.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   2.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   3.1  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    20   9.4  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    20   9.4  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -1

Query: 386 ITGHSRFTGYSCWDDXNISIFDGCLIAPQVPCAADLGWGVHVGKSAATPGVTGAMS 219
           +TG +   G +  +  + S  DG       P ++ L +G  V     +PG  G +S
Sbjct: 44  LTGSTNGDGGARSNADSTSHTDGASTPDVRPPSSSLSYGGPVNDDVRSPGTPGPLS 99


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -1

Query: 386 ITGHSRFTGYSCWDDXNISIFDGCLIAPQVPCAADLGWGVHVGKSAATPGVTGAMS 219
           +TG +   G +  +  + S  DG       P ++ L +G  V     +PG  G +S
Sbjct: 200 LTGSTNGDGGARSNADSTSHTDGASTPDVRPPSSSLSYGGPVNDDVRSPGTPGPLS 255


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +2

Query: 77  LYKMVQRTFPP-HHRGTLKW 133
           LYK +++ FPP    G L W
Sbjct: 286 LYKKIKKAFPPLSLHGQLLW 305


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 264 MNTPAKVSGTRDLRSYQAAIK 326
           M+ P  ++GT+ +   Q+AIK
Sbjct: 265 MHHPVAMTGTKTVMPSQSAIK 285


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 77  LYKMVQRTFPPHHRGTLKWWS 139
           L + + R    H  GTLK WS
Sbjct: 79  LEQFIVRFMKYHFFGTLKLWS 99



 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 47  NIFVVCLTCIYV 12
           +IF VC T IY+
Sbjct: 163 HIFTVCRTLIYI 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,199
Number of Sequences: 336
Number of extensions: 2462
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)