BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0965.Seq (449 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 76 3e-15 SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 37 0.002 SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 29 0.44 SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 28 0.58 SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 1.3 SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 1.8 SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 3.1 SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 7.1 SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 25 7.1 SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 24 9.4 SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 9.4 SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 24 9.4 >SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual Length = 341 Score = 75.8 bits (178), Expect = 3e-15 Identities = 36/64 (56%), Positives = 46/64 (71%), Gaps = 1/64 (1%) Frame = +3 Query: 255 LSHMNTPAKVSG-TRDLRSYQAAIKDADVXVIPAGVPRKPGMTRDDLFNTNASIVRDIAL 431 + H+NT + V G D + + A+ ADV +IPAGVPRKPGMTRDDLF TNASIVRD+A Sbjct: 72 IGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAF 131 Query: 432 SIAQ 443 + + Sbjct: 132 AAGE 135 Score = 53.2 bits (122), Expect = 2e-08 Identities = 29/54 (53%), Positives = 35/54 (64%) Frame = +1 Query: 94 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAAD 255 ++FSTTS R FK IGQPL++LLK N V+ LAL+DI PGVAAD Sbjct: 19 RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRG-APGVAAD 71 >SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 330 Score = 36.7 bits (81), Expect = 0.002 Identities = 18/40 (45%), Positives = 23/40 (57%) Frame = +3 Query: 324 KDADVXVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQ 443 KDA VI AG +KPG TR DL N SI ++I + + Sbjct: 86 KDATAVVITAGKNQKPGETRMDLLKANISIFKEILREVTK 125 >SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1233 Score = 28.7 bits (61), Expect = 0.44 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = -1 Query: 335 ISIFDGCLIAPQVPCAADLGWGVHVGKSAATPGVTGAMSYKASLVTRGFCFSRRAKGW 162 IS LI + A DL + + +A T + G + +K L+T G +R AK W Sbjct: 617 ISAVGNTLICDSMTVARDLSYNKRL--NAKTVTLEGTVIHKTGLITGGSSNNRSAKHW 672 >SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 398 Score = 28.3 bits (60), Expect = 0.58 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 443 LSNGQSNVTDNGSISVE*VITGHSRFTGYSCW 348 L NG + D + SV V+TGH+R CW Sbjct: 43 LVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCW 74 >SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase|Schizosaccharomyces pombe|chr 2|||Manual Length = 362 Score = 27.1 bits (57), Expect = 1.3 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +3 Query: 72 PCCTKWCKELFHHITEEL*SGGRWCR 149 P C WC ++ IT+ + G WCR Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342 >SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2|Schizosaccharomyces pombe|chr 1|||Manual Length = 750 Score = 26.6 bits (56), Expect = 1.8 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -2 Query: 256 SRLRRRGSQALCRIKPAWSPEDS 188 SRL++R S L I P WSP S Sbjct: 485 SRLKQRNSDLLNGINPQWSPFSS 507 >SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 489 Score = 25.8 bits (54), Expect = 3.1 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +3 Query: 60 KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 158 K C+ C + C+ +HHI E+L CRR Y Sbjct: 33 KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 1077 Score = 24.6 bits (51), Expect = 7.1 Identities = 10/32 (31%), Positives = 14/32 (43%) Frame = +3 Query: 141 WCRRWYRPAFGPSTEAESSGDQAGFIRHSACD 236 WC + +P F + S GD G R C+ Sbjct: 260 WCGKQEKPEFVKNLVPHSCGDPCGKTRGQDCE 291 >SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|||Manual Length = 809 Score = 24.6 bits (51), Expect = 7.1 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = -1 Query: 266 HVGKSAATPGVTGAMSYKASLVTRGFCFSRRAKGWPI 156 ++ +S TPG A K+ +T+G R A+G P+ Sbjct: 269 YIVQSHPTPGKFDAAKAKSLGITKGLDCGRLARGEPV 305 >SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1568 Score = 24.2 bits (50), Expect = 9.4 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = -1 Query: 119 LCDVVEKFFAPFCTARAAG 63 LC++V KFF CT G Sbjct: 217 LCNLVHKFFVDACTVPGEG 235 >SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 3699 Score = 24.2 bits (50), Expect = 9.4 Identities = 9/25 (36%), Positives = 10/25 (40%) Frame = +2 Query: 236 PPASQPTFPHEHPSQGQRHKGPEEL 310 PP S P P HP P E+ Sbjct: 198 PPRSAPNTPSSHPMSAASSASPAEI 222 >SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1462 Score = 24.2 bits (50), Expect = 9.4 Identities = 12/51 (23%), Positives = 23/51 (45%) Frame = -2 Query: 268 FMWESRLRRRGSQALCRIKPAWSPEDSASVEGPKAGRYHRRHQRPPL*SSS 116 FM++ L R ++ ++ +WS +D+ + H P L +SS Sbjct: 806 FMFDGLLDRLNEESRTKLVSSWSKQDAFDYSKSSTHQEHLSKNLPTLNTSS 856 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,875,390 Number of Sequences: 5004 Number of extensions: 38699 Number of successful extensions: 109 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 109 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 166231220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -