Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0965.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    76   3e-15
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    37   0.002
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    29   0.44 
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    28   0.58 
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   1.3  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   1.8  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    26   3.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.1  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   7.1  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    24   9.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   9.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    24   9.4  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 75.8 bits (178), Expect = 3e-15
 Identities = 36/64 (56%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
 Frame = +3

Query: 255 LSHMNTPAKVSG-TRDLRSYQAAIKDADVXVIPAGVPRKPGMTRDDLFNTNASIVRDIAL 431
           + H+NT + V G   D +  + A+  ADV +IPAGVPRKPGMTRDDLF TNASIVRD+A 
Sbjct: 72  IGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAF 131

Query: 432 SIAQ 443
           +  +
Sbjct: 132 AAGE 135



 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 29/54 (53%), Positives = 35/54 (64%)
 Frame = +1

Query: 94  KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAAD 255
           ++FSTTS R FK         IGQPL++LLK N  V+ LAL+DI    PGVAAD
Sbjct: 19  RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRG-APGVAAD 71


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +3

Query: 324 KDADVXVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQ 443
           KDA   VI AG  +KPG TR DL   N SI ++I   + +
Sbjct: 86  KDATAVVITAGKNQKPGETRMDLLKANISIFKEILREVTK 125


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -1

Query: 335 ISIFDGCLIAPQVPCAADLGWGVHVGKSAATPGVTGAMSYKASLVTRGFCFSRRAKGW 162
           IS     LI   +  A DL +   +  +A T  + G + +K  L+T G   +R AK W
Sbjct: 617 ISAVGNTLICDSMTVARDLSYNKRL--NAKTVTLEGTVIHKTGLITGGSSNNRSAKHW 672


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 443 LSNGQSNVTDNGSISVE*VITGHSRFTGYSCW 348
           L NG   + D  + SV  V+TGH+R     CW
Sbjct: 43  LVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCW 74


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 72  PCCTKWCKELFHHITEEL*SGGRWCR 149
           P C  WC  ++  IT+   + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 256 SRLRRRGSQALCRIKPAWSPEDS 188
           SRL++R S  L  I P WSP  S
Sbjct: 485 SRLKQRNSDLLNGINPQWSPFSS 507


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 60  KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 158
           K C+ C  + C+  +HHI E+L      CRR Y
Sbjct: 33  KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 141 WCRRWYRPAFGPSTEAESSGDQAGFIRHSACD 236
           WC +  +P F  +    S GD  G  R   C+
Sbjct: 260 WCGKQEKPEFVKNLVPHSCGDPCGKTRGQDCE 291


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 266 HVGKSAATPGVTGAMSYKASLVTRGFCFSRRAKGWPI 156
           ++ +S  TPG   A   K+  +T+G    R A+G P+
Sbjct: 269 YIVQSHPTPGKFDAAKAKSLGITKGLDCGRLARGEPV 305


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 119 LCDVVEKFFAPFCTARAAG 63
           LC++V KFF   CT    G
Sbjct: 217 LCNLVHKFFVDACTVPGEG 235


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +2

Query: 236 PPASQPTFPHEHPSQGQRHKGPEEL 310
           PP S P  P  HP        P E+
Sbjct: 198 PPRSAPNTPSSHPMSAASSASPAEI 222


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = -2

Query: 268 FMWESRLRRRGSQALCRIKPAWSPEDSASVEGPKAGRYHRRHQRPPL*SSS 116
           FM++  L R   ++  ++  +WS +D+         + H     P L +SS
Sbjct: 806 FMFDGLLDRLNEESRTKLVSSWSKQDAFDYSKSSTHQEHLSKNLPTLNTSS 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,390
Number of Sequences: 5004
Number of extensions: 38699
Number of successful extensions: 109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)