Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0965.Seq
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1371 - 26100553-26101767 77 5e-15
08_02_0774 - 21047696-21048889 75 2e-14
01_06_1220 + 35493575-35494765 75 3e-14
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 75 4e-14
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 73 1e-13
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 72 2e-13
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 71 3e-13
04_04_0587 + 26410808-26411338 31 0.57
05_04_0057 + 17543016-17543312 29 1.3
10_03_0046 + 7357777-7357992 29 1.7
07_03_0730 + 21030123-21030338 29 1.7
01_06_1064 + 34237919-34238155 29 1.7
08_02_1015 - 23597445-23597628,23597654-23597877 29 2.3
04_01_0527 - 6913266-6913802 28 3.0
12_02_0696 - 22227255-22227488 28 4.0
01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858 28 4.0
07_03_0859 + 22054087-22055421 27 5.3
02_02_0442 - 10318576-10319109 27 9.2
>07_03_1371 - 26100553-26101767
Length = 404
Score = 77.4 bits (182), Expect = 5e-15
Identities = 36/65 (55%), Positives = 43/65 (66%)
Frame = +3
Query: 255 LSHMNTPAKVSGTRDLRSYQAAIKDADVXVIPAGVPRKPGMTRDDLFNTNASIVRDIALS 434
L H NTPAKV+G + DV VIPAGVPRKPGMTRDDLF NA IVR++ +
Sbjct: 121 LGHCNTPAKVAGFTGKEELAGCLAGVDVVVIPAGVPRKPGMTRDDLFGINAGIVRELVEA 180
Query: 435 IAQNA 449
+A +A
Sbjct: 181 VADHA 185
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +1
Query: 157 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAAD 255
IGQPL+LL+K +PLV+ L LYDIA V GV AD
Sbjct: 89 IGQPLSLLVKMSPLVSALHLYDIANV-DGVTAD 120
>08_02_0774 - 21047696-21048889
Length = 397
Score = 75.4 bits (177), Expect = 2e-14
Identities = 36/64 (56%), Positives = 43/64 (67%)
Frame = +3
Query: 255 LSHMNTPAKVSGTRDLRSYQAAIKDADVXVIPAGVPRKPGMTRDDLFNTNASIVRDIALS 434
LSH NTP++V +K DV VIPAGVPRKPGMTRDDLFN NASIV+ + +
Sbjct: 119 LSHCNTPSQVLDFTGPSELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKSLVEA 178
Query: 435 IAQN 446
+A N
Sbjct: 179 VADN 182
Score = 45.2 bits (102), Expect = 2e-05
Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +1
Query: 91 AKNFSTTS-QRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAAD 255
AK+ S S + ++K IGQPL LL+K +PLV+ L LYDIA V GVAAD
Sbjct: 64 AKSGSQISPEASYKVAVLGAAGGIGQPLGLLIKMSPLVSELHLYDIANV-KGVAAD 118
>01_06_1220 + 35493575-35494765
Length = 396
Score = 74.9 bits (176), Expect = 3e-14
Identities = 36/64 (56%), Positives = 43/64 (67%)
Frame = +3
Query: 255 LSHMNTPAKVSGTRDLRSYQAAIKDADVXVIPAGVPRKPGMTRDDLFNTNASIVRDIALS 434
LSH NTP++V +K DV VIPAGVPRKPGMTRDDLFN NASIV+ + +
Sbjct: 119 LSHCNTPSQVLDFTGPSELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKTLVEA 178
Query: 435 IAQN 446
+A N
Sbjct: 179 VADN 182
Score = 44.8 bits (101), Expect = 3e-05
Identities = 27/67 (40%), Positives = 37/67 (55%)
Frame = +1
Query: 55 ALKPAALAVQNGAKNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPV 234
++ P + N + S + ++K IGQPL LL+K +PLV+ L LYDIA V
Sbjct: 55 SISPRIVPKANSGSHISP--EASYKVAVLGAAGGIGQPLGLLIKMSPLVSALHLYDIANV 112
Query: 235 TPGVAAD 255
GVAAD
Sbjct: 113 -KGVAAD 118
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 74.5 bits (175), Expect = 4e-14
Identities = 33/63 (52%), Positives = 46/63 (73%)
Frame = +3
Query: 255 LSHMNTPAKVSGTRDLRSYQAAIKDADVXVIPAGVPRKPGMTRDDLFNTNASIVRDIALS 434
+SH+N PA+V G A++ +D+ +IPAGVPRKPGMTRDDLFN NA IV+++ +
Sbjct: 71 VSHINAPAQVKGFMGDDQLGEALEGSDIVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTA 130
Query: 435 IAQ 443
IA+
Sbjct: 131 IAK 133
Score = 50.8 bits (116), Expect = 5e-07
Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 55 ALKPAALAVQNGAKNFSTTS-QRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAP 231
+L +A V + +S+ S Q K IGQPL+LL+K NPLV+ L+LYDIA
Sbjct: 4 SLMRSASQVLRRRRGYSSASGQPERKVAILGAAGGIGQPLSLLMKLNPLVSSLSLYDIAG 63
Query: 232 VTPGVAAD 255
TPGVAAD
Sbjct: 64 -TPGVAAD 70
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 72.5 bits (170), Expect = 1e-13
Identities = 33/63 (52%), Positives = 45/63 (71%)
Frame = +3
Query: 255 LSHMNTPAKVSGTRDLRSYQAAIKDADVXVIPAGVPRKPGMTRDDLFNTNASIVRDIALS 434
+SH+N+PA V G A++ +DV +IPAGVPRKPGMTRDDLFN NA IV+ + +
Sbjct: 70 VSHINSPALVKGFVGEEQLGEALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTA 129
Query: 435 IAQ 443
I++
Sbjct: 130 ISK 132
Score = 51.2 bits (117), Expect = 4e-07
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +1
Query: 157 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAAD 255
IGQPLALL+K NPLV+ L+LYDIA TPGVAAD
Sbjct: 38 IGQPLALLMKLNPLVSSLSLYDIAG-TPGVAAD 69
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 71.7 bits (168), Expect = 2e-13
Identities = 35/63 (55%), Positives = 42/63 (66%)
Frame = +3
Query: 255 LSHMNTPAKVSGTRDLRSYQAAIKDADVXVIPAGVPRKPGMTRDDLFNTNASIVRDIALS 434
+SHMNT A V G + A+ D+ +IPAGVPRKPGMTRDDLFN NA IVR +
Sbjct: 101 ISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG 160
Query: 435 IAQ 443
IA+
Sbjct: 161 IAK 163
Score = 47.2 bits (107), Expect = 6e-06
Identities = 25/44 (56%), Positives = 28/44 (63%)
Frame = +1
Query: 124 FKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAAD 255
FK IGQPLALL+K NPLV+ L LYD+ TPGV AD
Sbjct: 58 FKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVN-TPGVTAD 100
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 71.3 bits (167), Expect = 3e-13
Identities = 33/63 (52%), Positives = 43/63 (68%)
Frame = +3
Query: 255 LSHMNTPAKVSGTRDLRSYQAAIKDADVXVIPAGVPRKPGMTRDDLFNTNASIVRDIALS 434
+SHM+T A V G +AA+ D+ +IPAG+PRKPGMTRDDLFN NA IVR +
Sbjct: 86 VSHMDTTAVVRGFLGPNQLEAALTGMDLVIIPAGLPRKPGMTRDDLFNKNAGIVRSLCEG 145
Query: 435 IAQ 443
+A+
Sbjct: 146 VAK 148
Score = 45.2 bits (102), Expect = 2e-05
Identities = 24/44 (54%), Positives = 28/44 (63%)
Frame = +1
Query: 124 FKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAAD 255
FK IGQPL+LL+K NPLV+ L LYD+ TPGV AD
Sbjct: 43 FKVAVLGAAGGIGQPLSLLMKLNPLVSVLHLYDVVN-TPGVTAD 85
>04_04_0587 + 26410808-26411338
Length = 176
Score = 30.7 bits (66), Expect = 0.57
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 223 CRIKPAWSPEDSASVEGPKAGRYHRRHQRP 134
CR KPA SP A++ P GR RR +RP
Sbjct: 3 CRAKPASSPPSRAALAAP--GRCRRRRRRP 30
>05_04_0057 + 17543016-17543312
Length = 98
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 62 NLPPLLYKMVQRTFPPHHRGTLKWWSLVP 148
++P L+ V R PP RG +WW L P
Sbjct: 39 SVPSLVEVEVDRCGPPGRRGGRRWWLLCP 67
>10_03_0046 + 7357777-7357992
Length = 71
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 132 GGRWCRRWY-RPAFGPSTEAESSGDQAGF 215
GG RRW+ RPA G STE S + GF
Sbjct: 25 GGDGLRRWWCRPASGRSTERVSGREVGGF 53
>07_03_0730 + 21030123-21030338
Length = 71
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 132 GGRWCRRWY-RPAFGPSTEAESSGDQAGF 215
GG RRW+ RPA G STE S + GF
Sbjct: 25 GGDGLRRWWCRPASGRSTERVSGREVGGF 53
>01_06_1064 + 34237919-34238155
Length = 78
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 132 GGRWCRRWY-RPAFGPSTEAESSGDQAGF 215
GG RRW+ RPA G STE S + GF
Sbjct: 25 GGDGLRRWWCRPASGRSTERVSGREVGGF 53
>08_02_1015 - 23597445-23597628,23597654-23597877
Length = 135
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 208 AWSPEDSASVEGPKAGRYHRRHQRPPL*SSSVMW 107
AW+ ED+A + + G + RPP SS V W
Sbjct: 2 AWTVEDAAISDELRRGAWMTERTRPPPLSSDVAW 35
>04_01_0527 - 6913266-6913802
Length = 178
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = -2
Query: 253 RLRRRGSQALCRIKPA--WSPEDSASVEGPKAGRYHRRHQ 140
R RRR + CR P SPE S + HRRHQ
Sbjct: 100 RRRRRAHRRQCRPSPPPPLSPEPSTAAVAEPPAAAHRRHQ 139
>12_02_0696 - 22227255-22227488
Length = 77
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 207 AGFIRHSACDPRRRSRLSHMNTPAKVSGTRDLRSYQAAIKDADVXVIPAGVP 362
AG +R +AC R + +S + + DAD+ V+PAG P
Sbjct: 2 AGVVRSAACSGGEGERKTSWPEVVGLSAEEAKKVILKDMPDADIVVLPAGSP 53
>01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858
Length = 275
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 220 RIKPAWSPEDSASVEGPKAGRYHRRHQR 137
R+ PAW+PE+ A +E G Y RH R
Sbjct: 109 RLSPAWTPEEDACLERLARG-YGFRHWR 135
>07_03_0859 + 22054087-22055421
Length = 444
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 159 RPAFGPSTEAESSGDQAGFIRHSACDPRRRSRLSHMNTPAKVSGTRDLRS 308
R A G E + D GF+ + CDP R + PA ++ + L +
Sbjct: 162 RGAVGGGGEVDGQDDDPGFMDLAVCDPLSRRYVLLPAVPADLAASAQLHN 211
>02_02_0442 - 10318576-10319109
Length = 177
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -2
Query: 253 RLRRRGSQALCRIKP--AWSPEDSASVEGPKAGRYHRRHQ 140
R RRR + R P + SPE S + G HRRHQ
Sbjct: 99 RRRRRAHRRRRRPSPPPSLSPEPSTAAVGEPPAAAHRRHQ 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,638,861
Number of Sequences: 37544
Number of extensions: 330364
Number of successful extensions: 938
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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