Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0965.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)                63   9e-11
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)               29   2.3  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_22900| Best HMM Match : DUF1399 (HMM E-Value=0.00019)               27   5.4  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           27   7.2  
SB_1747| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    27   9.5  

>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
          Length = 368

 Score = 63.3 bits (147), Expect = 9e-11
 Identities = 28/44 (63%), Positives = 37/44 (84%)
 Frame = +3

Query: 312 QAAIKDADVXVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQ 443
           +AA++   V  IPAGVPRKPGMTRDDLFNTNASIV++++ + A+
Sbjct: 66  KAALEGCSVVAIPAGVPRKPGMTRDDLFNTNASIVKNLSEACAK 109


>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
          Length = 358

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 236 PPASQPTFPHEHPSQGQRH 292
           PP  QP  PH +PS G  H
Sbjct: 159 PPTPQPYHPHPYPSSGPMH 177


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 189 ESSGDQAGFIRHSACDPRRRSRLSHM 266
           E SGD+A  IR   CD RR  +L H+
Sbjct: 453 EESGDEA-LIRRYRCDKRRERQLKHV 477


>SB_22900| Best HMM Match : DUF1399 (HMM E-Value=0.00019)
          Length = 696

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 275 WGVHVGKSAATPGVTGA-MSYKASLVTRGFCFSRRAKGW 162
           WG+ +G+     G     ++ K  L+ +G+C+ R+ + W
Sbjct: 555 WGILMGRKVCLHGNQAQILALKLFLMGKGYCYVRKYRDW 593


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 9/35 (25%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 169 KAGRYHRRHQRPPL*SSSVMWWK---SSLHHFVQQ 74
           +  RYH+   + P+ +++ +WW+   + + HF+Q+
Sbjct: 266 RQARYHKWRPKVPVKNNAKLWWQFASTCILHFIQE 300


>SB_1747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 270 TPAKVSGTRDLRSYQAAIKDADVXVIPAGVPR--KPGMTRDDLFNTNASIVRDI 425
           TP  ++GT  + S QA +K+  +  + AGV +  K   +++D+       ++DI
Sbjct: 103 TPQALNGTVPVTSTQAVVKEGKIIDVRAGVEQTIKGSGSQNDVIVVETPALQDI 156


>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 62  NLPPLLYKMVQRTFPPHHRGT 124
           NLPPL+Y  ++ T P  H GT
Sbjct: 159 NLPPLIYNNIE-TLPQLHHGT 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,047,318
Number of Sequences: 59808
Number of extensions: 337518
Number of successful extensions: 872
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)