Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0965.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...    84   5e-17
Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical pr...    30   0.68 
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    30   0.89 
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AL117204-1|CAB55141.1|  328|Caenorhabditis elegans Hypothetical ...    27   6.3  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score = 83.8 bits (198), Expect = 5e-17
 Identities = 40/63 (63%), Positives = 50/63 (79%)
 Frame = +3

Query: 255 LSHMNTPAKVSGTRDLRSYQAAIKDADVXVIPAGVPRKPGMTRDDLFNTNASIVRDIALS 434
           LSH+++ AKV+     +   AA+++ADV VIPAGVPRKPGMTRDDLFNTNA IVRD+A  
Sbjct: 72  LSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAV 131

Query: 435 IAQ 443
           IA+
Sbjct: 132 IAK 134



 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 25/33 (75%), Positives = 27/33 (81%)
 Frame = +1

Query: 157 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAAD 255
           IGQPL LLLKQ+PLV  LALYD+   TPGVAAD
Sbjct: 40  IGQPLGLLLKQDPLVAHLALYDVVN-TPGVAAD 71


>Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical
           protein T23F1.3 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 140 LVPPVVSASLWPFY*SRILW*PGWLYTT*RL*PPASQPTF 259
           + P ++   +WP+    + W  GWLY+   + PP    +F
Sbjct: 265 IAPTLLVPLIWPYLKIEVSWQTGWLYSVVGMYPPFDSISF 304


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 291 CR*PWLGCSCGKVGCDAGGH 232
           CR    GC CG  GC  GGH
Sbjct: 116 CRPCCCGCGCGCCGCGGGGH 135


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 297 PLCR*PWLGCSCGKVGCDAGGHRR 226
           P C     GC CG  GC  GG +R
Sbjct: 118 PCCCGCGCGCGCGCCGCGGGGRKR 141


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 297 PLCR*PWLGCSCGKVGCDAGGHRR 226
           P C     GC CG  GC  GG +R
Sbjct: 100 PCCCGCGCGCGCGCCGCGGGGRKR 123


>Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical
           protein ZK1067.4 protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 124 SSSVMWWKSSLHHFVQQGRQV 62
           S  ++WWKS  +H+ ++ RQV
Sbjct: 120 SPPIVWWKSVCYHYTRKTRQV 140


>Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical
           protein C14H10.4 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 140 LVPPVVSASLWPFY*SRILW*PGWLYTT*RL*PPASQPTF 259
           L+ PVV AS + F+ S+  W  GWLY+     PP    +F
Sbjct: 265 LLCPVV-ASFFHFFFSKFSWQTGWLYSFICFYPPFDSISF 303


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 273 GCSCGKVGCDAGGHRR 226
           GC CG  GC  GG +R
Sbjct: 122 GCGCGCCGCGGGGRKR 137


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 273 GCSCGKVGCDAGGHRR 226
           GC CG  GC  GG +R
Sbjct: 108 GCGCGCCGCGGGGRKR 123


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 273 GCSCGKVGCDAGGHRR 226
           GC CG  GC  GG +R
Sbjct: 111 GCGCGCCGCGGGGRKR 126


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 273 GCSCGKVGCDAGGHRR 226
           GC CG  GC  GG +R
Sbjct: 123 GCGCGCCGCGGGGRKR 138


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 273 GCSCGKVGCDAGGHRR 226
           GC CG  GC  GG +R
Sbjct: 123 GCGCGCCGCGGGGRKR 138


>AL117204-1|CAB55141.1|  328|Caenorhabditis elegans Hypothetical
           protein Y116A8C.1 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 119 LCDVVEKFFAPFCTARAAG 63
           +C  +  FF PFC  RAAG
Sbjct: 164 VCISIRTFFGPFCQNRAAG 182


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 323 DGCLIAPQVPCAADLGWGVHVGKSAATPGVTGAMSYKASLVTRGF 189
           D C++  Q+  AADL   + V +S+ TPGV    S   +++  GF
Sbjct: 279 DDCMMTRQI--AADLLRRLVVSESSTTPGVPTLASTGKNVLNYGF 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,810,820
Number of Sequences: 27780
Number of extensions: 244731
Number of successful extensions: 585
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)