Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0964.Seq
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    94   1e-20
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    27   1.9  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   1.9  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   7.5  
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    25   9.9  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.9  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    25   9.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 48/89 (53%), Positives = 56/89 (62%)
 Frame = -3

Query: 511 IGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFT 332
           IGF+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   
Sbjct: 349 IGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMF 407

Query: 331 GLSLNSYILKIQFFTIFIGVNITFFPNIF 245
           GL  N  +  IQF+ +FIGVNI F P  F
Sbjct: 408 GLMYNETLASIQFWILFIGVNIVFGPQHF 436



 Score = 34.3 bits (75), Expect = 0.012
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -2

Query: 254 QHFLGLAGIPRRYSDYPD 201
           QHFLGL G+PRR  DYP+
Sbjct: 434 QHFLGLNGMPRRIPDYPE 451


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 217 YRRGIPAKPKKCWEKMLYLL 276
           ++ GIP KPK  WE  LY L
Sbjct: 41  WKVGIPGKPKTSWEGGLYKL 60


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 335 YRPFIKFLYTKNSIFYNIYWSKYNIFSQHFLGL 237
           +RPF KFL  K  IF + YW +  +   ++LGL
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGL 232


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -3

Query: 478 LTGVILANSSIDITLHDTYYVV 413
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 185 FMKYMSLDNLNIVEVFQLNLKNVGKKCYIYSNKYC 289
           +++  + +N  + EVFQL +    KK + +S K C
Sbjct: 166 YVECSAKENTGVNEVFQLAVGLTIKKSFSFSKKSC 200


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 441 ISIEELAKITPVNPPTVNKNTKPIFI 518
           + +E LAKITP+      KN K  F+
Sbjct: 152 LEVETLAKITPIWINVAKKNKKEDFL 177


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 148 NREIYEPNEEIIFHEIYESG*SEYRRGIPAKPKKCWEKMLY 270
           ++ IYEP E +   E+ E    E R  IP      WEK  +
Sbjct: 63  DKNIYEPKENLEEKELSEGFLDESRLEIPEAGHN-WEKSFF 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,172
Number of Sequences: 5004
Number of extensions: 28193
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)