Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0964.Seq
(555 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 109 2e-24
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_30239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 5.9
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 109 bits (261), Expect = 2e-24
Identities = 53/89 (59%), Positives = 60/89 (67%)
Frame = -3
Query: 511 IGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFT 332
IGFVFLFT+GGLTGVILANSS+D+ +HDTYYVVAHFHYVLS + T
Sbjct: 46 IGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKIT 105
Query: 331 GLSLNSYILKIQFFTIFIGVNITFFPNIF 245
G N KI F+ +FIGVNITFFP F
Sbjct: 106 GYCYNELYGKIHFWIMFIGVNITFFPQHF 134
Score = 43.2 bits (97), Expect = 1e-04
Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Frame = -2
Query: 314 LYTKNSIFYNIYWSKYNIFSQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 135
LY K + F QHFLGLAG PRRYSD+ D
Sbjct: 112 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 171
Query: 134 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 3
+ + + + N S S+E Q PPA H+YNELP +
Sbjct: 172 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 43.2 bits (97), Expect = 1e-04
Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Frame = -2
Query: 314 LYTKNSIFYNIYWSKYNIFSQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 135
LY K + F QHFLGLAG PRRYSD+ D
Sbjct: 26 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 85
Query: 134 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 3
+ + + + N S S+E Q PPA H+YNELP +
Sbjct: 86 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 133
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = -3
Query: 334 TGLSLNSYILKIQFFTIFIGVNITFFPNIF 245
TG N KI F+ +FIGVNITFFP F
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHF 48
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -2
Query: 251 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 75
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 74 LPS---SIE*YQNLPPAEHSYNELPIL 3
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -2
Query: 251 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 75
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 74 LPS---SIE*YQNLPPAEHSYNELPIL 3
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -2
Query: 251 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 75
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 74 LPS---SIE*YQNLPPAEHSYNELPIL 3
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -2
Query: 251 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 75
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 74 LPS---SIE*YQNLPPAEHSYNELPIL 3
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -2
Query: 251 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 75
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 74 LPS---SIE*YQNLPPAEHSYNELPIL 3
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -2
Query: 251 HFLGLAGIPRRYSDYPD 201
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 347 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSQ 252
+ FIY + FL +KN F+ YW+ YN F Q
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQ 47
>SB_30239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 438 VISIEELAKITPVNPPTVNKNTKPIFIKY*GYN*FEFHV 554
V+ + + KI P N P VN +T+P+ G+N F+ +V
Sbjct: 65 VLPLSQTGKIDPFNQPKVNGHTRPVLDL--GWNPFDDNV 101
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 76 ISHHQLNDIKIYHQQNIHIMNYQF 5
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,482,377
Number of Sequences: 59808
Number of extensions: 168967
Number of successful extensions: 339
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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