BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0964.Seq (555 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 28 5.2 Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 28 5.2 AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 28 5.2 Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical p... 27 6.9 AL117206-2|CAB60445.1| 303|Caenorhabditis elegans Hypothetical ... 27 6.9 AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical ... 27 6.9 >Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein C35C5.1 protein. Length = 2962 Score = 27.9 bits (59), Expect = 5.2 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%) Frame = -2 Query: 335 YRPFIKFLYTKNSIF-YNIYWSKY--NIFSQH 249 YRPF K + T +SIF +N+Y ++ N S+H Sbjct: 2463 YRPFAKLIATYDSIFKFNVYLFEHFLNCISKH 2494 >Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical protein C35C5.1 protein. Length = 2962 Score = 27.9 bits (59), Expect = 5.2 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%) Frame = -2 Query: 335 YRPFIKFLYTKNSIF-YNIYWSKY--NIFSQH 249 YRPF K + T +SIF +N+Y ++ N S+H Sbjct: 2463 YRPFAKLIATYDSIFKFNVYLFEHFLNCISKH 2494 >AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. Length = 2962 Score = 27.9 bits (59), Expect = 5.2 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%) Frame = -2 Query: 335 YRPFIKFLYTKNSIF-YNIYWSKY--NIFSQH 249 YRPF K + T +SIF +N+Y ++ N S+H Sbjct: 2463 YRPFAKLIATYDSIFKFNVYLFEHFLNCISKH 2494 >Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical protein Y43F4B.3 protein. Length = 714 Score = 27.5 bits (58), Expect = 6.9 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = -2 Query: 527 LIFYEDWFCIFIHSRRINRC 468 LI+YE W C+ +H + C Sbjct: 314 LIYYEGWTCLTLHRLSVEEC 333 >AL117206-2|CAB60445.1| 303|Caenorhabditis elegans Hypothetical protein Y67A10A.4 protein. Length = 303 Score = 27.5 bits (58), Expect = 6.9 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +2 Query: 176 KLYFMKYMSLDNLNIVEVFQLNLKNVGKKCYIYSNKYCKKL 298 K +F +Y S L+ +E+ N K++G C +YS+ KK+ Sbjct: 61 KFWFSRYSSKLILDDIEI---NYKDIGGSCDVYSSDTRKKI 98 >AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical protein Y43F4B.3 protein. Length = 714 Score = 27.5 bits (58), Expect = 6.9 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = -2 Query: 527 LIFYEDWFCIFIHSRRINRC 468 LI+YE W C+ +H + C Sbjct: 314 LIYYEGWTCLTLHRLSVEEC 333 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,200,015 Number of Sequences: 27780 Number of extensions: 147768 Number of successful extensions: 357 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 347 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 357 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1134321766 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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