Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0964.Seq
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    28   5.2  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      28   5.2  
Z83230-10|CAL22704.2|  714|Caenorhabditis elegans Hypothetical p...    27   6.9  
AL117206-2|CAB60445.1|  303|Caenorhabditis elegans Hypothetical ...    27   6.9  
AL021481-9|CAA16332.3|  714|Caenorhabditis elegans Hypothetical ...    27   6.9  

>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -2

Query: 335  YRPFIKFLYTKNSIF-YNIYWSKY--NIFSQH 249
            YRPF K + T +SIF +N+Y  ++  N  S+H
Sbjct: 2463 YRPFAKLIATYDSIFKFNVYLFEHFLNCISKH 2494


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -2

Query: 335  YRPFIKFLYTKNSIF-YNIYWSKY--NIFSQH 249
            YRPF K + T +SIF +N+Y  ++  N  S+H
Sbjct: 2463 YRPFAKLIATYDSIFKFNVYLFEHFLNCISKH 2494


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -2

Query: 335  YRPFIKFLYTKNSIF-YNIYWSKY--NIFSQH 249
            YRPF K + T +SIF +N+Y  ++  N  S+H
Sbjct: 2463 YRPFAKLIATYDSIFKFNVYLFEHFLNCISKH 2494


>Z83230-10|CAL22704.2|  714|Caenorhabditis elegans Hypothetical
           protein Y43F4B.3 protein.
          Length = 714

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 527 LIFYEDWFCIFIHSRRINRC 468
           LI+YE W C+ +H   +  C
Sbjct: 314 LIYYEGWTCLTLHRLSVEEC 333


>AL117206-2|CAB60445.1|  303|Caenorhabditis elegans Hypothetical
           protein Y67A10A.4 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 176 KLYFMKYMSLDNLNIVEVFQLNLKNVGKKCYIYSNKYCKKL 298
           K +F +Y S   L+ +E+   N K++G  C +YS+   KK+
Sbjct: 61  KFWFSRYSSKLILDDIEI---NYKDIGGSCDVYSSDTRKKI 98


>AL021481-9|CAA16332.3|  714|Caenorhabditis elegans Hypothetical
           protein Y43F4B.3 protein.
          Length = 714

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 527 LIFYEDWFCIFIHSRRINRC 468
           LI+YE W C+ +H   +  C
Sbjct: 314 LIYYEGWTCLTLHRLSVEEC 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,200,015
Number of Sequences: 27780
Number of extensions: 147768
Number of successful extensions: 357
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)