Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0964.Seq
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   6.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 508 GFVFLFTVGGLTGVI 464
           G V +  VGGLTG+I
Sbjct: 201 GSVVIHVVGGLTGLI 215


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 73  SHHQLNDIKIYHQQNIHIM 17
           SHH L+  ++ +QQ+ ++M
Sbjct: 72  SHHHLHHHQVLYQQSPYLM 90


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 252 LGKNVIFTPIN 284
           L +N IFTP+N
Sbjct: 91  LSRNAIFTPLN 101


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 252 LGKNVIFTPIN 284
           L +N IFTP+N
Sbjct: 91  LSRNAIFTPLN 101


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 194 YMSLDNLNIVEVFQLNLKNVGK 259
           YM+ + +N VE  Q  L ++GK
Sbjct: 311 YMTNNGVNNVEAVQKELTDLGK 332


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 194 YMSLDNLNIVEVFQLNLKNVGK 259
           YM+ + +N VE  Q  L ++GK
Sbjct: 311 YMTNNGVNNVEAVQKELTDLGK 332


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 194 YMSLDNLNIVEVFQLNLKNVGK 259
           YM+ + +N VE  Q  L ++GK
Sbjct: 311 YMTNNGVNNVEAVQKELTDLGK 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,399
Number of Sequences: 438
Number of extensions: 2008
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)