Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0964.Seq
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58410.1 68416.m06510 meprin and TRAF homology domain-contain...    28   4.8  
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con...    27   8.4  

>At3g58410.1 68416.m06510 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 328

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +2

Query: 170 MKKLYFMKYMSLDNLNIVEVFQLNL-KNVGKK-CYI---YSNKYCKKLNF*YIRI**KAC 334
           M  L+F++ +  D     E F  ++ K VGKK  ++   +S+  CKK      +I    C
Sbjct: 1   MNLLFFLQVLQFDQ---EESFTTSMTKQVGKKFAWVIKNFSSLQCKKFYSVPFQI--GDC 55

Query: 335 K*RISVNKSPNNCKY 379
           K R+S+    NNC Y
Sbjct: 56  KWRLSIYPKGNNCDY 70


>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
           contains Pfam profile PF00297: ribosomal protein L3
          Length = 271

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 148 NREIYEPNEEIIFHEIYESG 207
           N E +EPN++++F EI++ G
Sbjct: 141 NIEGFEPNQKLVFDEIFKEG 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,330,988
Number of Sequences: 28952
Number of extensions: 125294
Number of successful extensions: 245
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)