Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0963.Seq
         (439 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    25   0.32 
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   6.8  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   6.8  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 25.0 bits (52), Expect = 0.32
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = -2

Query: 120 NVCLLKYVVVLLAFRCDILC----KPVFLW 43
           N  L  + ++ L+FRC  LC    K  FLW
Sbjct: 142 NASLFIFDLIFLSFRCTKLCKEANKTAFLW 171


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 260 YXLLVISSINLLFQXLRTYSYVFGNLSGTS 171
           +  LV+ +INL    + TY+ +F  L  T+
Sbjct: 209 FKALVLQTINLQITFIWTYNDLFVMLISTA 238


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 260 YXLLVISSINLLFQXLRTYSYVFGNLSGTS 171
           +  LV+ +INL    + TY+ +F  L  T+
Sbjct: 209 FKALVLQTINLQITFIWTYNDLFVMLISTA 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,551
Number of Sequences: 336
Number of extensions: 1396
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)